Literature DB >> 33817343

Building a biofoundry.

Maciej B Holowko1, Emma K Frow2, Janet C Reid1, Michelle Rourke1,3, Claudia E Vickers1,4.   

Abstract

A biofoundry provides automation and analytics infrastructure to support the engineering of biological systems. It allows scientists to perform synthetic biology and aligned experimentation on a high-throughput scale, massively increasing the solution space that can be examined for any given problem or question. However, establishing a biofoundry is a challenging undertaking, with numerous technical and operational considerations that must be addressed. Using collated learnings, here we outline several considerations that should be addressed prior to and during establishment. These include drivers for establishment, institutional models, funding and revenue models, personnel, hardware and software, data management, interoperability, client engagement and biosecurity issues. The high cost of establishment and operation means that developing a long-term business model for biofoundry sustainability in the context of funding frameworks, actual and potential client base, and costing structure is critical. Moreover, since biofoundries are leading a conceptual shift in experimental design for bioengineering, sustained outreach and engagement with the research community are needed to grow the client base. Recognition of the significant, long-term financial investment required and an understanding of the complexities of operationalization is critical for a sustainable biofoundry venture. To ensure state-of-the-art technology is integrated into planning, extensive engagement with existing facilities and community groups, such as the Global Biofoundries Alliance, is recommended. © Crown copyright 2020.

Keywords:  biofoundry; high-throughput; synthetic biology

Year:  2020        PMID: 33817343      PMCID: PMC7998708          DOI: 10.1093/synbio/ysaa026

Source DB:  PubMed          Journal:  Synth Biol (Oxf)        ISSN: 2397-7000


  22 in total

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Journal:  Nat Biotechnol       Date:  2007-06       Impact factor: 54.908

2.  The automated lab.

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Review 4.  Models for DNA Design Tools: The Trouble with Metaphors Is That They Don't Go Away.

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5.  Altering the anaerobic transcription factor FNR confers a hemolytic phenotype on Escherichia coli K12.

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Journal:  Proc Natl Acad Sci U S A       Date:  1998-09-01       Impact factor: 11.205

6.  Haves and have nots must find a better way: The case for open scientific hardware.

Authors:  André Maia Chagas
Journal:  PLoS Biol       Date:  2018-09-27       Impact factor: 8.029

7.  Building a global alliance of biofoundries.

Authors:  Nathan Hillson; Mark Caddick; Yizhi Cai; Jose A Carrasco; Matthew Wook Chang; Natalie C Curach; David J Bell; Rosalind Le Feuvre; Douglas C Friedman; Xiongfei Fu; Nicholas D Gold; Markus J Herrgård; Maciej B Holowko; James R Johnson; Richard A Johnson; Jay D Keasling; Richard I Kitney; Akihiko Kondo; Chenli Liu; Vincent J J Martin; Filippo Menolascina; Chiaki Ogino; Nicola J Patron; Marilene Pavan; Chueh Loo Poh; Isak S Pretorius; Susan J Rosser; Nigel S Scrutton; Marko Storch; Hille Tekotte; Evelyn Travnik; Claudia E Vickers; Wen Shan Yew; Yingjin Yuan; Huimin Zhao; Paul S Freemont
Journal:  Nat Commun       Date:  2019-05-09       Impact factor: 14.919

8.  Author Correction: Building a global alliance of biofoundries.

Authors:  Nathan Hillson; Mark Caddick; Yizhi Cai; Jose A Carrasco; Matthew Wook Chang; Natalie C Curach; David J Bell; Rosalind Le Feuvre; Douglas C Friedman; Xiongfei Fu; Nicholas D Gold; Markus J Herrgård; Maciej B Holowko; James R Johnson; Richard A Johnson; Jay D Keasling; Richard I Kitney; Akihiko Kondo; Chenli Liu; Vincent J J Martin; Filippo Menolascina; Chiaki Ogino; Nicola J Patron; Marilene Pavan; Chueh Loo Poh; Isak S Pretorius; Susan J Rosser; Nigel S Scrutton; Marko Storch; Hille Tekotte; Evelyn Travnik; Claudia E Vickers; Wen Shan Yew; Yingjin Yuan; Huimin Zhao; Paul S Freemont
Journal:  Nat Commun       Date:  2019-07-11       Impact factor: 14.919

9.  The Foundry: the DNA synthesis and construction Foundry at Imperial College.

Authors:  Stephen Chambers; Richard Kitney; Paul Freemont
Journal:  Biochem Soc Trans       Date:  2016-06-15       Impact factor: 5.407

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4.  Pandemic preparedness: synthetic biology and publicly funded biofoundries can rapidly accelerate response time.

Authors:  Claudia E Vickers; Paul S Freemont
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5.  Biofoundry-assisted expression and characterization of plant proteins.

Authors:  Quentin M Dudley; Yao-Min Cai; Kalyani Kallam; Hubert Debreyne; Jose A Carrasco Lopez; Nicola J Patron
Journal:  Synth Biol (Oxf)       Date:  2021-09-11
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