| Literature DB >> 33814866 |
Sergey M Ivanov1, Denis S Koltun1.
Abstract
Single crystal structures in a series of 7-bromo-, 8-bromo-, and 7,8-dibromo-3-tert-butylpyrazolo[5,1-c][1,2,4]triazin-4(1H)-ones have been investigated by X-ray diffraction. Novel 7-bromo- and 7,8-dibromo-3-tert-butylpyrazolo[5,1-c][1,2,4]triazines were synthesized by reduction of triazine carbonyl with dehydrative aromatization in acidic media, and their XRD structural features were compared with that of the 4-oxo analogs. The lengths and bond angles and the packing of molecules in crystals have been considered. Non-valence interactions for some of the studied compounds were observed. Correlations between the presence of bromine atoms at different positions and structural features are determined. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s11224-021-01768-0.Entities:
Keywords: Crystal structure, X-ray diffraction, 1,2,4-Triazine, Pyrazolo[5,1-c][1,2,4]triazine
Year: 2021 PMID: 33814866 PMCID: PMC8006638 DOI: 10.1007/s11224-021-01768-0
Source DB: PubMed Journal: Struct Chem ISSN: 1040-0400 Impact factor: 1.887

Scheme 1
Crystal data, data collection, and structure refinement for compounds 2a-d
| Compound | 2a | 2b | 2c | 2d·DMSO | 2d |
|---|---|---|---|---|---|
| Formula | C9H11BrN4O | C9H10Br2N4O | C9H11BrN4O | C12H19BrN4O2S | C10H13BrN4O |
| 271.13 | 350.03 | 271.13 | 363.28 | 285.15 | |
| Crystal system | Monoclinic | Orthorhombic | Triclinic | Triclinic | Orthorhombic |
| Space group | |||||
| Unit cell dimensions | |||||
|
| 13.0854(3) | 11.6162(3) | 9.9149(5) | 6.9289(2) | 11.6416(2) |
|
| 7.4580(2) | 12.1198(3) | 11.5754(6) | 10.2508(3 | 12.0120(2) |
|
| 11.7128(3) | 17.1209(4) | 12.1650(6) | 11.7436(3) | 17.1704(3) |
|
| 101.8950(10) | 90 | 67.8606(18) | 83.8248(8) | 90 |
| Volume, Å3 | 1118.52(5) | 2410.38(10) | 1101.58(10) | 793.54(4) | 2401.09(7) |
| Z | 4 | 8 | 4 | 2 | 8 |
| Calcd. density (g/cm3) | 1.610 | 1.929 | 1.635 | 1.520 | 1.578 |
| μ (mm−1) | 3.655 | 6.710 | 3.711 | 2.728 | 3.410 |
| 544 | 1360 | 544 | 372 | 1152 | |
| Crystal size (mm) | 0.57 × 0.15 x 0.09 | 0.58 × 0.06 × 0.05 | 0.53 × 0.17 × 0.06 | 0.59 × 0.54 × 0.48 | 0.20 × 0.105 × 0.075 |
| Θ range (°) | 3.161 to 35.000 | 2.379 to 39.394 | 1.951 to 31.000 | 2.076 to 37.038 | 2.372 to 34.343 |
| Completeness to Θmax | 1.000 | 0.998 | 0.999 | 0.998 | 0.999 |
| Index ranges | −21 ≤ −12 ≤ −18 ≤ | −20 ≤ −21 ≤ −30 ≤ | −12 ≤ −14 ≤ | −11 ≤ −17 ≤ −19 ≤ | −18 ≤ −19 ≤ −27 ≤ |
| Reflections | |||||
| Measured | 36447 | 117001 | 7017 | 50659 | 64380 |
| Independent [ | 4906 [0.0427] | 7174 [0.0401] | 7017 [ - ] | 8101 [0.0345] | 5028 [0.0647] |
| Observed [ | 4010 | 5697 | 5650 | 7446 | 3567 |
| Parameters, restraints | 143, 0 | 152, 0 | 284, 2 | 192, 0 | 205, 24 |
| R1, wR2 [ | 0.0291, 0.0609 | 0.0387, 0.0973 | 0.0773, 0.2019 | 0.0234, 0.0598 | 0.0375, 0.0767 |
| R1, wR2 (all data) | 0.0429, 0.0661 | 0.0529, 0.1047 | 0.0973, 0.2182 | 0.0269, 0.0614 | 0.0661, 0.0885 |
| GooF on | 1.041 | 1.117 | 1.081 | 1.034 | 1.043 |
|
| 0.621, −0.653 | 2.112, −0.761 | 3.108, −1.591 | 0.462, -0.825 | 0.465, −0.672 |
| CCDC number | 2065233 | 2065234 | 2065235 | 2065237 | 2065236 |
Crystal data, data collection, and structure refinement for compounds 3a-c
| Compound | 3a | 3b | 3c |
|---|---|---|---|
| Formula | C10H13BrN4 | C9H10Br2N4 | C9H11BrN4 |
| 269.15 | 334.03 | 255.13 | |
| Crystal system | Orthorhombic | Monoclinic | Monoclinic |
| Space group | |||
| Unit cell dimensions | |||
|
| 17.6328(6) | 6.8857(4) | 6.05670(10) |
|
| 6.7165(2) | 7.3453(4) | 12.7391(3) |
|
| 19.8019(7) | 22.5552(14) | 13.6146(3) |
|
| 90 | 90.135(3) | 101.5990(10) |
| Volume, Å3 | 2345.15(13) | 1140.78(12) | 1029.01(4) |
| 8 | 4 | 4 | |
| Calcd. density (g/cm3) | 1.525 | 1.945 | 1.647 |
| μ (mm−1) | 3.480 | 7.079 | 3.961 |
| 1088 | 648 | 512 | |
| Crystal ≤ size (mm) | 0.57 × 0.38 × 0.23 | 0.361 × 0.323 × 0.072 | 0.59 × 0.19 × 0.18 |
| Θ range (°) | 2.310 to 33.176 | 2.917 to 30.998 | 3.055 to 33.170 |
| Completeness to Θmax | 0.999 | 0.997 | 1.000 |
| Index ranges | −27 ≤ −10 ≤ −30 ≤ | −9 ≤ −10 ≤ −32 ≤ | −9 ≤ −19 ≤ −20 ≤ |
| Reflections | |||
| Measured | 58659 | 56077 | 32573 |
| Independent [ | 4796 [0.0404] | 3639 [0.0550] | 3935 [0.0328] |
| Observed [ | 3960 | 3639 | 3935 |
| Parameters, restraints | 238, 0 | 139, 0 | 130, 0 |
| R1, wR2 [ | 0.0283, 0.0691 | 0.0679, 0.1724 | 0.0218, 0.0534 |
| R1, wR2 (all data) | 0.0388, 0.0747 | 0.0749, 0.1771 | 0.0270, 0.0555 |
| GooF on | 1.026 | 1.202 | 1.045 |
| 0.480, −0.349 | 1.807, −1.483 | 0.415, −0.632 | |
| CCDC number | 2065238 | 2065239 | 2065240 |
Fig. 1Molecular structures of 2a, 2c and 3c. H-atoms of methyl groups for 2a and 3c are omitted; displacement ellipsoids are shown at the 50% probability level
Fig. 2Molecular structures of 2d, 2d·DMSO, and 3a, and packing of compound 3a in a single crystal. H-atoms of methyl groups for 2d and 3a are omitted; displacement ellipsoids are shown at the 50% probability level
Fig. 3Molecular structures of 2b and 3b. H-atoms of methyl groups for 2b are omitted; displacement ellipsoids are shown at the 50% probability level
Selected bond distances in 2a, 2c and 3c (Å)
| Bond | 2a | 2c | 3c |
|---|---|---|---|
| Br–C8 | 1.8658(13) | - | - |
| Br–C7 | - | 1.854(5) | 1.8619(11) |
| O–C4 | 1.2132(16) | 1.209(6) | - |
| N1–N2 | 1.3425(17) | 1.340(6) | 1.3153(13) |
| N1–C9 | 1.3478(18) | 1.351(6) | 1.3460(14) |
| N2–C3 | 1.3081(18) | 1.295(6) | 1.3668(13) |
| N5–C9 | 1.3670(17) | 1.378(6) | 1.3938(13) |
| N5–N6 | 1.3686(16) | 1.365(6) | 1.3492(13) |
| N5–C4 | 1.4011(18) | 1.387(7) | 1.3504(14) |
| N6–C7 | 1.3349(19) | 1.331(7) | 1.3523(14) |
| C3–C4 | 1.478(2) | 1.492(7) | 1.3788(15) |
| C7–C8 | 1.4035(19) | 1.410(7) | 1.3880(15) |
| C8–C9 | 1.380(2) | 1.390(7) | 1.3941(15) |
Selected bond distances in 2d, 2d·DMSO and 3a (Å)
| Bond | 2d | 2d·DMSO | 3a |
|---|---|---|---|
| Br–C7 | 1.8652(18) | 1.8670(8) | 1.8629(19) |
| O–C4 | 1.216(2) | 1.2208(10) | - |
| C8–C14 | 1.495(3) | 1.4953(11) | 1.489(3) |
| N1–N2 | 1.339(2) | 1.3335(10) | 1.308(2) |
| N1–C9 | 1.350(2) | 1.3521(10) | 1.354(2) |
| N2–C3 | 1.305(2) | 1.3076(10) | 1.381(3) |
| N5–N6 | 1.371(2) | 1.3620(10) | 1.345(2) |
| N5–C9 | 1.371(2) | 1.3751(9) | 1.384(2) |
| N5–C4 | 1.393(2) | 1.3928(11) | 1.360(2) |
| N6–C7 | 1.328(2) | 1.3284(11) | 1.350(2) |
| C3–C4 | 1.471(2) | 1.4694(11) | 1.366(3) |
| C7–C8 | 1.405(2) | 1.4070(11) | 1.388(3) |
| C8–C9 | 1.385(3) | 1.3828(11) | 1.398(3) |
Selected bond distances in 2b and 3b (Å)
| Bond | 2b | 3b |
|---|---|---|
| Br–C7 | 1.8569(17) | 1.851(7) |
| Br–C8 | 1.8576(16) | 1.855(6) |
| O–C4 | 1.213(2) | - |
| N1–N2 | 1.341(2) | 1.307(8) |
| N1–C9 | 1.345(2) | 1.349(9) |
| N2–C3 | 1.311(2) | 1.373(9) |
| N5–C9 | 1.365(2) | 1.382(9) |
| N5–N6 | 1.368(2) | 1.354(8) |
| N5–C4 | 1.402(2) | 1.368(8) |
| N6–C7 | 1.327(2) | 1.344(9) |
| C3–C4 | 1.471(2) | 1.384(9) |
| C7–C8 | 1.407(2) | 1.398(9) |
| C8–C9 | 1.380(2) | 1.387(9) |
Intramolecular hydrogen-bond parameters (Å, °) in 2a-d, and 3c
| Compound | H··· | ||||
|---|---|---|---|---|---|
| N1—H1···N6i | 0.86(2) | 2.02(2) | 2.8647(16) | 170(2) | |
| N1—H1···O1ii | 0.81(3) | 2.57(3) | 3.029(2) | 118(2) | |
| N1—H1···N6ii | 0.81(3) | 2.17(3) | 2.967(2) | 170(3) | |
| N1—H1···O1iii | 0.81(3) | 2.59(6) | 3.266(6) | 142(7) | |
| N1—H1···N6iii | 0.81(3) | 2.23(5) | 2.944(6) | 148(8) | |
| N1—H1···O1iii | 0.84(3) | 2.41(3) | 2.969(2) | 125(3) | |
| N1—H1···N6iii | 0.84(3) | 2.21(3) | 3.015(2) | 160(3) | |
| N1—H1···O1 | 0.910(16) | 1.753(16) | 2.6624(9) | 177.4(15) | |
| C(4)—H(4)···N(1)iv | 0.95 | 2.35 | 3.2935(13) | 172 |
Symmetry codes: (i) x, −y+3/2, z+1/2; (ii) −x+3/2, y−1/2, z; (iii) −x+3/2, y+1/2, z; (iv) x−1, y, z