Literature DB >> 33809526

Isolation and Genetic Characterization of Puumala Orthohantavirus Strains from France.

Johann Vulin1, Séverine Murri1, Sarah Madrières1,2, Maxime Galan2, Caroline Tatard2, Sylvain Piry2, Gabriele Vaccari3, Claudia D'Agostino3, Nathalie Charbonnel2, Guillaume Castel2, Philippe Marianneau1.   

Abstract

Puumala orthohantavirus (PUUV) causes a mild form of haemorrhagic fever with renal syndrome (HFRS) called nephropathia epidemica (NE), regularly diagnosed in Europe. France represents the western frontier of the expansion of NE in Europe with two distinct areas: an endemic area (north-eastern France) where PUUV circulates in rodent populations, with the detection of many human NE cases, and a non-endemic area (south-western France) where the virus is not detected, with only a few human cases being reported. In this study, we describe the different stages of the isolation of two PUUV strains from two distinct French geographical areas: Ardennes (endemic area) and Loiret (non-endemic area). To isolate PUUV efficiently, we selected wild bank voles (Myodes glareolus, the specific reservoir of PUUV) captured in these areas and that were seronegative for anti-PUUV IgG (ELISA) but showed a non-negligible viral RNA load in their lung tissue (qRT-PCR). With this study design, we were able to cultivate and maintain these two strains in Vero E6 cells and also propagate both strains in immunologically neutral bank voles efficiently and rapidly. High-throughput and Sanger sequencing results provided a better assessment of the impact of isolation methods on viral diversity.

Entities:  

Keywords:  Hantavirus; Puumala; isolation

Year:  2021        PMID: 33809526      PMCID: PMC7999636          DOI: 10.3390/pathogens10030349

Source DB:  PubMed          Journal:  Pathogens        ISSN: 2076-0817


  25 in total

Review 1.  Viral quasispecies complexity measures.

Authors:  Josep Gregori; Celia Perales; Francisco Rodriguez-Frias; Juan I Esteban; Josep Quer; Esteban Domingo
Journal:  Virology       Date:  2016-04-06       Impact factor: 3.616

2.  Molecular evolution of Puumala hantavirus.

Authors:  T Sironen; A Vaheri; A Plyusnin
Journal:  J Virol       Date:  2001-12       Impact factor: 5.103

3.  Cell culture adaptation of Puumala hantavirus changes the infectivity for its natural reservoir, Clethrionomys glareolus, and leads to accumulation of mutants with altered genomic RNA S segment.

Authors:  A Lundkvist; Y Cheng; K B Sjölander; B Niklasson; A Vaheri; A Plyusnin
Journal:  J Virol       Date:  1997-12       Impact factor: 5.103

4.  First insights into Puumala orthohantavirus circulation in a rodent population in Alsace, France.

Authors:  E Monchatre-Leroy; S Murri; G Castel; D Calavas; F Boué; V Hénaux; P Marianneau
Journal:  Zoonoses Public Health       Date:  2018-03-25       Impact factor: 2.702

5.  An efficient in vivo method for the isolation of Puumala virus in Syrian hamsters and the characterization of the isolates from Russia.

Authors:  Takahiro Seto; Evgeniy A Tkachenko; Vyacheslav G Morozov; Yoichi Tanikawa; Sergey I Kolominov; Sergey N Belov; Ichiro Nakamura; Nobuo Hashimoto; Yasuhiro Kon; Alexander E Balakiev; Tamara K Dzagurnova; Olga A Medvedkina; Mina Nakauchi; Mariko Ishizuka; Kentaro Yoshii; Kumiko Yoshimatsu; Leonid V Ivanov; Jiro Arikawa; Ikuo Takashima; Hiroaki Kariwa
Journal:  J Virol Methods       Date:  2010-12-28       Impact factor: 2.014

6.  Characterization of two substrains of Puumala virus that show phenotypes that are different from each other and from the original strain.

Authors:  Karin B Sundström; Malin Stoltz; Nina Lagerqvist; Åke Lundkvist; Kirill Nemirov; Jonas Klingström
Journal:  J Virol       Date:  2010-11-24       Impact factor: 5.103

7.  DADA2: High-resolution sample inference from Illumina amplicon data.

Authors:  Benjamin J Callahan; Paul J McMurdie; Michael J Rosen; Andrew W Han; Amy Jo A Johnson; Susan P Holmes
Journal:  Nat Methods       Date:  2016-05-23       Impact factor: 28.547

8.  Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform.

Authors:  Martin Kircher; Susanna Sawyer; Matthias Meyer
Journal:  Nucleic Acids Res       Date:  2011-10-21       Impact factor: 16.971

9.  Phylogeography of Puumala orthohantavirus in Europe.

Authors:  Guillaume Castel; François Chevenet; Maria Razzauti; Séverine Murri; Philippe Marianneau; Jean-François Cosson; Noël Tordo; Alexander Plyusnin
Journal:  Viruses       Date:  2019-07-24       Impact factor: 5.048

10.  Measurements of intrahost viral diversity require an unbiased diversity metric.

Authors:  Lei Zhao; Christopher J R Illingworth
Journal:  Virus Evol       Date:  2019-01-30
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