| Literature DB >> 33807743 |
Jiri Patocka1,2, Kamil Kuca2,3, Patrik Oleksak3, Eugenie Nepovimova3, Martin Valis4, Michal Novotny4, Blanka Klimova4.
Abstract
Since December 2019, SARS-CoV-2 (COVID-19) has been a worldwide pandemic with enormous consequences for human health and the world economy. Remdesivir is the only drug in the world that has been approved for the treating of COVID-19. This drug, as well as vaccination, still has uncertain effectiveness. Drug repurposing could be a promising strategy how to find an appropriate molecule: rapamycin could be one of them. The authors performed a systematic literature review of available studies on the research describing rapamycin in association with COVID-19 infection. Only peer-reviewed English-written articles from the world's acknowledged databases Web of Science, PubMed, Springer and Scopus were involved. Five articles were eventually included in the final analysis. The findings indicate that rapamycin seems to be a suitable candidate for drug repurposing. In addition, it may represent a better candidate for COVID-19 therapy than commonly tested antivirals. It is also likely that its efficiency will not be reduced by the high rate of viral RNA mutation.Entities:
Keywords: COVID-19; SARS-CoV-19; mTOR inhibitor; rapamycin; sirolimus
Year: 2021 PMID: 33807743 PMCID: PMC8001969 DOI: 10.3390/ph14030217
Source DB: PubMed Journal: Pharmaceuticals (Basel) ISSN: 1424-8247
Summary of the three most common vaccines worldwide (according to who.int) [6].
| Vaccine Type | Developer/Name | Phase 3 Trials | Number of Countries with Status Approved |
|---|---|---|---|
| RNA | BioNTech/Pfizer/BNT162b2 | NCT04368728 | 57 |
| Non replicating viral vector | Oxford/AstraZeneca/AZD1222 | CTRI/2020/08/027170 | 46 |
| RNA | Moderna/mRNA-1273 | NCT04649151 | 37 |
Figure 1Selection workflow.
Figure 2The structure of rapamycin.
Figure 3(A): Structure of SARS-CoV-2 with structural proteins. (B): Detail of SARS-CoV-2 spike protein interaction with ACE2 receptor of the host cell. (C): Top: Genome structure of the SARS-CoV-2 involves two genes ORF1a (yellow) and ORF1b (orange) encoding 16 non-structural proteins. Genes encoding four main structural proteins—spike (S), membrane (M), envelope (E) and nucleocapsid (N) are colored green. Bottom left: Major structural domains of SARS-CoV-2 S protein—signal peptide (SP), N-terminal domain (NTD), receptor-binding domain (RBD), fusion peptide (FP), heptad repeat regions 1 (HR1) and 2 (HR2), transmembrane (TM), cytoplasmic tail region (CP). Bottom right: Major structural domains of SARS-CoV-2 N protein—NTD, serine-arginine (SR)-rich domain, C-terminal domain (CTD). Rapamycin´s target domains are highlighted. (D): Simplified lifecycle of SARS-CoV-2: (1) TMPRS2 receptor activates spike glycoprotein of SARS-CoV-2 toward binding to ACE2 receptor on surface of the host cell. (2) Endocytosis of SARS-CoV-2 into the host cell. (3) Release of the viral RNA. (4) Viral RNA is translated into RNA-dependent RNA polymerase (RdRp). (5) RNA-dependent RNA polymerase synthetizes (−)-sense genomic RNA, a template for synthesis of (+)-sense genomic or subgenomic RNA. (6A) Translation of the viral structural protein N is performed in cytoplasm, while proteins S, M and E are translated at endoplasmic reticulum. (6B) Viral RNA and N protein form RNA-N complex. (7) Endoplasmic reticulum-Golgi intermediate complex (ERGIC) with inserted S, M and E proteins and RNA-N complex interact to assembly of the virion. (8) Mature virion is released from the host cell via exocytosis. Assumed rapamycin-mediated inhibitions are highlighted. Figure was created with BioRender.com.
Figure 4The mTOR signaling pathway and its important regulatory functions are shown. Activated mTORC1 results in increased protein synthesis via downstream effectors S6K1 and 4EBP1. AKT-mediated activation of NF-κB increases gene expression followed by cytokine and chemokine production. Rapamycin acts as the inhibitor of mTORC1 (acute inhibition) and mTORC2 (chronic inhibition) that is crucial for affecting of the downstream pathway. Abbreviations: 4EBP1, eukaryotic translation initiation factor 4E-binding protein 1; AKT, protein kinase B; AMPK, 5’-adenosine monophosphate-activated protein kinase; CaMKKβ, Ca2+/calmodulin-dependent protein kinase kinase-β; DEPTOR, DEP domain-containing mTOR-interacting protein; FKBP12, FK506-binding protein of 12 kDa; GF, growth factors; IRS1, insulin receptor substrate 1; LKB1, liver kinase B1; NF-κB, nuclear factor kappa-light-chain-enhancer of activated B cells; mLST8, mammalian lethal with SEC13 protein 8; mSIN1, mammalian SAPK interacting protein 1; PDK1, 3-phosphoinositide-dependent protein kinase 1; PI3K, phosphatidylinositol 3-kinase; PIP2, phosphatidylinositol (4,5)-bisphosphate; PIP3, phosphatidylinositol (3,4,5)-trisphosphate; PKC-α, protein kinase C alpha; PRAS40, proline-rich AKT substrate of 40 kDa; PROTOR, protein observed with rictor; RAPTOR, regulatory associated protein of mTOR; Rheb, ras homolog enriched in brain; RICTOR, rapamycin-insensitive companion of mTOR; RTK, receptor tyrosine kinase; S6K1, ribosomal protein S6 kinase 1; SGK1, serum- and glucocorticoid-induced kinase 1; SREBP, sterol regulatory element binding protein 1; TAK1, TGF-β activated kinase 1; TEL2, telomere maintenance 2; TFEB, transcription factor EB; TSC1 and 2, tuberous sclerosis complex 1 and 2; TTI1, TEL2-interacting protein 1; ULK1, Unc-51 like autophagy activating kinase. Figure was created with BioRender.com.
Summary of open clinical trials of rapamycin for treatment of COVID-19 infection (according to clinicaltrials.gov, accessed on 14 February 2021).
| NCT Number | NCT04482712 | NCT04341675 | NCT04461340 |
|---|---|---|---|
| Status | Not yet recruiting | Recruiting | Recruiting |
| Start | January 2021 | 24 April 2020 | 15 August 2020 |
| Title | Effects of mTOR Inhibition with Sirolimus (RAPA) in Patients with COVID-19 to Moderate the Progression of ARDS | Sirolimus Treatment in Hospitalized Patients with COVID-19 Pneumonia | Efficacy and Safety of Sirolimus in COVID-19 Infection |
| Phase | 1/2 | 2 | 2 |
| Number of subjects | 20 | 30 | 40 |
| Age | 60+ | 18+ | 18+ |
| Planned outcomes | Survival rate; Change in Clinical Status assessed by the WHO scale; Change in Clinical Status assessed by the NIAID scale; All-cause mortality; duration of ECMO; Duration of supplemental oxygen; Length of hospital stay; Length of time to SARS-CoV2 negativity. | Proportion of patients who are alive and free from advanced respiratory support measures at day 28; Proportion of patients who require escalation in care; Change over time in study-specific biomarkers (LDH, Ferritin, D-dimer, lymphocyte count); Proportion of patients surviving to hospital discharge; | Time to clinical recovery; Viral clearance; Radiological lung extension; drug adverse events; 28 day mortality; Intensive care unit admission rate; Duration of hospital stay; Duration from hospitalization to discharge |
| Location | San Antonio, TX, USA | Chicago, IL, USA; Cincinnati, OH, USA | Faculty of Medicine, Alexandria university, Egypt |
| Last update | 30 November 2020 | 20 May 2020 | 9 September 2020 |