Literature DB >> 33803118

Urgent Need for Field Surveys of Coronaviruses in Southeast Asia to Understand the SARS-CoV-2 Phylogeny and Risk Assessment for Future Outbreaks.

Murat Seyran1, Sk Sarif Hassan2, Vladimir N Uversky3, Pabitra Pal Choudhury4, Bruce D Uhal5, Kenneth Lundstrom6, Diksha Attrish7, Nima Rezaei8,9, Alaa A A Aljabali10, Shinjini Ghosh11, Damiano Pizzol12, Parise Adadi13, Tarek Mohamed Abd El-Aziz14,15, Ramesh Kandimalla16, Murtaza M Tambuwala17, Amos Lal18, Gajendra Kumar Azad19, Samendra P Sherchan20, Wagner Baetas-da-Cruz21, Giorgio Palù22, Adam M Brufsky23.   

Abstract

Phylogenetic analysis of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is focused on a single isolate of bat coronaviruses (bat CoVs) which does not adequately represent genetically related coronaviruses (CoVs) [...].

Entities:  

Year:  2021        PMID： 33803118      PMCID： PMC7999587          DOI： 10.3390/biom11030398

Source DB:  PubMed          Journal:  Biomolecules        ISSN： 2218-273X


  35 in total

1.  Analysis of error profiles in deep next-generation sequencing data.

Authors:  Xiaotu Ma; Ying Shao; Liqing Tian; Diane A Flasch; Heather L Mulder; Michael N Edmonson; Yu Liu; Xiang Chen; Scott Newman; Joy Nakitandwe; Yongjin Li; Benshang Li; Shuhong Shen; Zhaoming Wang; Sheila Shurtleff; Leslie L Robison; Shawn Levy; John Easton; Jinghui Zhang
Journal:  Genome Biol       Date:  2019-03-14       Impact factor: 13.583

2.  SARS-CoV-2 in fruit bats, ferrets, pigs, and chickens: an experimental transmission study.

Authors:  Kore Schlottau; Melanie Rissmann; Annika Graaf; Jacob Schön; Julia Sehl; Claudia Wylezich; Dirk Höper; Thomas C Mettenleiter; Anne Balkema-Buschmann; Timm Harder; Christian Grund; Donata Hoffmann; Angele Breithaupt; Martin Beer
Journal:  Lancet Microbe       Date:  2020-07-07

3.  Household pets and SARS-CoV2 transmissibility in the light of the ACE2 intrinsic disorder status.

Authors:  Vladimir N Uversky; Fatma Elrashdy; Abdullah Aljadawi; Elrashdy M Redwan
Journal:  J Biomol Struct Dyn       Date:  2020-09-18

4.  Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable.

Authors:  Carla Mavian; Sergei Kosakovsky Pond; Simone Marini; Brittany Rife Magalis; Anne-Mieke Vandamme; Simon Dellicour; Samuel V Scarpino; Charlotte Houldcroft; Julian Villabona-Arenas; Taylor K Paisie; Nídia S Trovão; Christina Boucher; Yun Zhang; Richard H Scheuermann; Olivier Gascuel; Tommy Tsan-Yuk Lam; Marc A Suchard; Ana Abecasis; Eduan Wilkinson; Tulio de Oliveira; Ana I Bento; Heiko A Schmidt; Darren Martin; James Hadfield; Nuno Faria; Nathan D Grubaugh; Richard A Neher; Guy Baele; Philippe Lemey; Tanja Stadler; Jan Albert; Keith A Crandall; Thomas Leitner; Alexandros Stamatakis; Mattia Prosperi; Marco Salemi
Journal:  Proc Natl Acad Sci U S A       Date:  2020-05-07       Impact factor: 11.205

5.  Are pangolins the intermediate host of the 2019 novel coronavirus (SARS-CoV-2)?

Authors:  Ping Liu; Jing-Zhe Jiang; Xiu-Feng Wan; Yan Hua; Linmiao Li; Jiabin Zhou; Xiaohu Wang; Fanghui Hou; Jing Chen; Jiejian Zou; Jinping Chen
Journal:  PLoS Pathog       Date:  2020-05-14       Impact factor: 6.823

6.  Pangolins Lack IFIH1/MDA5, a Cytoplasmic RNA Sensor That Initiates Innate Immune Defense Upon Coronavirus Infection.

Authors:  Heinz Fischer; Erwin Tschachler; Leopold Eckhart
Journal:  Front Immunol       Date:  2020-05-08       Impact factor: 7.561

7.  From People to Panthera: Natural SARS-CoV-2 Infection in Tigers and Lions at the Bronx Zoo.

Authors:  Denise McAloose; Melissa Laverack; Leyi Wang; Mary Lea Killian; Paul P Calle; Karen Terio; Mia Kim Torchetti; Diego G Diel; Leonardo C Caserta; Fangfeng Yuan; Patrick K Mitchell; Krista Queen; Matthew R Mauldin; Brittany D Cronk; Susan L Bartlett; John M Sykes; Stephanie Zec; Tracy Stokol; Karen Ingerman; Martha A Delaney; Richard Fredrickson; Marina Ivančić; Melinda Jenkins-Moore; Katie Mozingo; Kerrie Franzen; Nichole Hines Bergeson; Laura Goodman; Haibin Wang; Ying Fang; Colleen Olmstead; Colleen McCann; Patrick Thomas; Erin Goodrich; François Elvinger; David C Smith; Suxiang Tong; Sally Slavinski
Journal:  mBio       Date:  2020-10-13       Impact factor: 7.867

8.  Predicting susceptibility to SARS-CoV-2 infection based on structural differences in ACE2 across species.

Authors:  Matthew R Alexander; Clara T Schoeder; Jacquelyn A Brown; Charles D Smart; Chris Moth; John P Wikswo; John A Capra; Jens Meiler; Wenbiao Chen; Meena S Madhur
Journal:  FASEB J       Date:  2020-10-04       Impact factor: 5.834

9.  The genetic structure of SARS-CoV-2 does not rule out a laboratory origin: SARS-COV-2 chimeric structure and furin cleavage site might be the result of genetic manipulation.

Authors:  Rossana Segreto; Yuri Deigin
Journal:  Bioessays       Date:  2020-11-17       Impact factor: 4.653
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  2 in total

1.  A unique view of SARS-CoV-2 through the lens of ORF8 protein.

Authors:  Sk Sarif Hassan; Alaa A A Aljabali; Pritam Kumar Panda; Shinjini Ghosh; Diksha Attrish; Pabitra Pal Choudhury; Murat Seyran; Damiano Pizzol; Parise Adadi; Tarek Mohamed Abd El-Aziz; Antonio Soares; Ramesh Kandimalla; Kenneth Lundstrom; Amos Lal; Gajendra Kumar Azad; Vladimir N Uversky; Samendra P Sherchan; Wagner Baetas-da-Cruz; Bruce D Uhal; Nima Rezaei; Gaurav Chauhan; Debmalya Barh; Elrashdy M Redwan; Guy W Dayhoff; Nicolas G Bazan; Ángel Serrano-Aroca; Amr El-Demerdash; Yogendra K Mishra; Giorgio Palu; Kazuo Takayama; Adam M Brufsky; Murtaza M Tambuwala
Journal:  Comput Biol Med       Date:  2021-04-15       Impact factor: 6.698

2.  Mathematical model of the feedback between global supply chain disruption and COVID-19 dynamics.

Authors:  Xingyu Li; Amin Ghadami; John M Drake; Pejman Rohani; Bogdan I Epureanu
Journal:  Sci Rep       Date:  2021-07-29       Impact factor: 4.379
  2 in total

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