Literature DB >> 33802369

Glioma biopsies Classification Using Raman Spectroscopy and Machine Learning Models on Fresh Tissue Samples.

Marco Riva1,2, Tommaso Sciortino2,3, Riccardo Secoli4, Ester D'Amico5, Sara Moccia6, Bethania Fernandes7, Marco Conti Nibali2,3, Lorenzo Gay2,3, Marco Rossi2,3, Elena De Momi5, Lorenzo Bello2,3.   

Abstract

Identifying tumor cells infiltrating normal-appearing brain tissue is critical to achieve a total glioma resection. Raman spectroscopy (RS) is an optical technique with potential for real-time glioma detection. Most RS reports are based on formalin-fixed or frozen samples, with only a few studies deployed on fresh untreated tissue. We aimed to probe RS on untreated brain biopsies exploring novel Raman bands useful in distinguishing glioma and normal brain tissue. Sixty-three fresh tissue biopsies were analyzed within few minutes after resection. A total of 3450 spectra were collected, with 1377 labelled as Healthy and 2073 as Tumor. Machine learning methods were used to classify spectra compared to the histo-pathological standard. The algorithms extracted information from 60 different Raman peaks identified as the most representative among 135 peaks screened. We were able to distinguish between tumor and healthy brain tissue with accuracy and precision of 83% and 82%, respectively. We identified 19 new Raman shifts with known biological significance. Raman spectroscopy was effective and accurate in discriminating glioma tissue from healthy brain ex-vivo in fresh samples. This study added new spectroscopic data that can contribute to further develop Raman Spectroscopy as an intraoperative tool for in-vivo glioma detection.

Entities:  

Keywords:  Raman spectroscopy; classification; glioma; machine learning; neuro-oncology

Year:  2021        PMID: 33802369      PMCID: PMC7959285          DOI: 10.3390/cancers13051073

Source DB:  PubMed          Journal:  Cancers (Basel)        ISSN: 2072-6694            Impact factor:   6.639


  47 in total

1.  Unsupervised unmixing of Raman microspectroscopic images for morphochemical analysis of non-dried brain tumor specimens.

Authors:  Norbert Bergner; Christoph Krafft; Kathrin D Geiger; Matthias Kirsch; Gabriele Schackert; Jürgen Popp
Journal:  Anal Bioanal Chem       Date:  2012-02-26       Impact factor: 4.142

2.  Identification of regions of normal grey matter and white matter from pathologic glioblastoma and necrosis in frozen sections using Raman imaging.

Authors:  Rachel Kast; Gregory Auner; Sally Yurgelevic; Brandy Broadbent; Aditya Raghunathan; Laila M Poisson; Tom Mikkelsen; Mark L Rosenblum; Steven N Kalkanis
Journal:  J Neurooncol       Date:  2015-09-10       Impact factor: 4.130

3.  Nonlinear microscopy, infrared, and Raman microspectroscopy for brain tumor analysis.

Authors:  Tobias Meyer; Norbert Bergner; Christiane Bielecki; Christoph Krafft; Denis Akimov; Bernd F M Romeike; Rupert Reichart; Rolf Kalff; Benjamin Dietzek; Jürgen Popp
Journal:  J Biomed Opt       Date:  2011-02       Impact factor: 3.170

4.  An extent of resection threshold for newly diagnosed glioblastomas.

Authors:  Nader Sanai; Mei-Yin Polley; Michael W McDermott; Andrew T Parsa; Mitchel S Berger
Journal:  J Neurosurg       Date:  2011-03-18       Impact factor: 5.115

5.  3D intra-operative ultrasound and MR image guidance: pursuing an ultrasound-based management of brainshift to enhance neuronavigation.

Authors:  Marco Riva; Christoph Hennersperger; Fausto Milletari; Amin Katouzian; Federico Pessina; Benjamin Gutierrez-Becker; Antonella Castellano; Nassir Navab; Lorenzo Bello
Journal:  Int J Comput Assist Radiol Surg       Date:  2017-04-08       Impact factor: 2.924

6.  Evaluation of the suitability of ex vivo handled ovarian tissues for optical diagnosis by Raman microspectroscopy.

Authors:  C Murali Krishna; G D Sockalingum; L Venteo; Rani A Bhat; Pralhad Kushtagi; M Pluot; M Manfait
Journal:  Biopolymers       Date:  2005-12-05       Impact factor: 2.505

7.  Neural networks improve brain cancer detection with Raman spectroscopy in the presence of operating room light artifacts.

Authors:  Michael Jermyn; Joannie Desroches; Jeanne Mercier; Marie-Andrée Tremblay; Karl St-Arnaud; Marie-Christine Guiot; Kevin Petrecca; Frederic Leblond
Journal:  J Biomed Opt       Date:  2016-09-01       Impact factor: 3.170

8.  A brain tumor molecular imaging strategy using a new triple-modality MRI-photoacoustic-Raman nanoparticle.

Authors:  Moritz F Kircher; Adam de la Zerda; Jesse V Jokerst; Cristina L Zavaleta; Paul J Kempen; Erik Mittra; Ken Pitter; Ruimin Huang; Carl Campos; Frezghi Habte; Robert Sinclair; Cameron W Brennan; Ingo K Mellinghoff; Eric C Holland; Sanjiv S Gambhir
Journal:  Nat Med       Date:  2012-04-15       Impact factor: 53.440

9.  Interrogation of IDH1 Status in Gliomas by Fourier Transform Infrared Spectroscopy.

Authors:  James M Cameron; Justin J A Conn; Christopher Rinaldi; Alexandra Sala; Paul M Brennan; Michael D Jenkinson; Helen Caldwell; Gianfelice Cinque; Khaja Syed; Holly J Butler; Mark G Hegarty; David S Palmer; Matthew J Baker
Journal:  Cancers (Basel)       Date:  2020-12-08       Impact factor: 6.639

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  7 in total

Review 1.  Machine Learning of Raman Spectroscopy Data for Classifying Cancers: A Review of the Recent Literature.

Authors:  Nathan Blake; Riana Gaifulina; Lewis D Griffin; Ian M Bell; Geraint M H Thomas
Journal:  Diagnostics (Basel)       Date:  2022-06-17

2.  Integration of Raman spectra with transcriptome data in glioblastoma multiforme defines tumour subtypes and predicts patient outcome.

Authors:  Pierre-Jean Le Reste; Eleftherios Pilalis; Marc Aubry; Mari McMahon; Luis Cano; Amandine Etcheverry; Aristotelis Chatziioannou; Eric Chevet; Alain Fautrel
Journal:  J Cell Mol Med       Date:  2021-11-12       Impact factor: 5.310

3.  Rapid Discrimination of Clinically Important Pathogens Through Machine Learning Analysis of Surface Enhanced Raman Spectra.

Authors:  Jia-Wei Tang; Jia-Qi Li; Xiao-Cong Yin; Wen-Wen Xu; Ya-Cheng Pan; Qing-Hua Liu; Bing Gu; Xiao Zhang; Liang Wang
Journal:  Front Microbiol       Date:  2022-04-08       Impact factor: 6.064

Review 4.  Intraoperative tissue classification methods in orthopedic and neurological surgeries: A systematic review.

Authors:  Aidana Massalimova; Maikel Timmermans; Hooman Esfandiari; Fabio Carrillo; Christoph J Laux; Mazda Farshad; Kathleen Denis; Philipp Fürnstahl
Journal:  Front Surg       Date:  2022-08-03

5.  Differentiation of glioblastoma tissues using spontaneous Raman scattering with dimensionality reduction and data classification.

Authors:  Igor Romanishkin; Tatiana Savelieva; Alexandra Kosyrkova; Vladimir Okhlopkov; Svetlana Shugai; Arseniy Orlov; Alexander Kravchuk; Sergey Goryaynov; Denis Golbin; Galina Pavlova; Igor Pronin; Victor Loschenov
Journal:  Front Oncol       Date:  2022-09-15       Impact factor: 5.738

6.  Classification of Diffuse Glioma Subtype from Clinical-Grade Pathological Images Using Deep Transfer Learning.

Authors:  Sanghyuk Im; Jonghwan Hyeon; Eunyoung Rha; Janghyeon Lee; Ho-Jin Choi; Yuchae Jung; Tae-Jung Kim
Journal:  Sensors (Basel)       Date:  2021-05-17       Impact factor: 3.576

Review 7.  DDRugging glioblastoma: understanding and targeting the DNA damage response to improve future therapies.

Authors:  Ola Rominiyi; Spencer J Collis
Journal:  Mol Oncol       Date:  2021-06-11       Impact factor: 6.603

  7 in total

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