Literature DB >> 33801334

The Role of Network Science in Glioblastoma.

Marta B Lopes1,2, Eduarda P Martins3,4, Susana Vinga5,6, Bruno M Costa3,4.   

Abstract

Network science has long been recognized as a well-established discipline across many biological domains. In the particular case of cancer genomics, network discovery is challenged by the multitude of available high-dimensional heterogeneous views of data. Glioblastoma (GBM) is an example of such a complex and heterogeneous disease that can be tackled by network science. Identifying the architecture of molecular GBM networks is essential to understanding the information flow and better informing drug development and pre-clinical studies. Here, we review network-based strategies that have been used in the study of GBM, along with the available software implementations for reproducibility and further testing on newly coming datasets. Promising results have been obtained from both bulk and single-cell GBM data, placing network discovery at the forefront of developing a molecularly-informed-based personalized medicine.

Entities:  

Keywords:  biomarker selection; causal discovery; differential network expression; model regularization; multi-omics; network analysis; personalized therapy; precision medicine

Year:  2021        PMID: 33801334      PMCID: PMC7958335          DOI: 10.3390/cancers13051045

Source DB:  PubMed          Journal:  Cancers (Basel)        ISSN: 2072-6694            Impact factor:   6.639


  153 in total

1.  CHCHD2 Is Coamplified with EGFR in NSCLC and Regulates Mitochondrial Function and Cell Migration.

Authors:  Yuhong Wei; Ravi N Vellanki; Étienne Coyaud; Vladimir Ignatchenko; Lei Li; Jonathan R Krieger; Paul Taylor; Jiefei Tong; Nhu-An Pham; Geoffrey Liu; Brian Raught; Bradly G Wouters; Thomas Kislinger; Ming Sound Tsao; Michael F Moran
Journal:  Mol Cancer Res       Date:  2015-03-17       Impact factor: 5.852

2.  Claudin-1 and claudin-5 expression and tight junction morphology are altered in blood vessels of human glioblastoma multiforme.

Authors:  S Liebner; A Fischmann; G Rascher; F Duffner; E H Grote; H Kalbacher; H Wolburg
Journal:  Acta Neuropathol       Date:  2000-09       Impact factor: 17.088

3.  Establishing cut-off points with clinical relevance for bcl-2, cyclin D1, p16, p21, p27, p53, Sox11 and WT1 expression in glioblastoma - a short report.

Authors:  Emma Camacho-Urkaray; Jorge Santos-Juanes; Francisco Borja Gutiérrez-Corres; Beatriz García; Luis M Quirós; Isabel Guerra-Merino; José Javier Aguirre; Iván Fernández-Vega
Journal:  Cell Oncol (Dordr)       Date:  2017-12-07       Impact factor: 6.730

4.  Cdk5 disruption attenuates tumor PD-L1 expression and promotes antitumor immunity.

Authors:  R Dixon Dorand; Joseph Nthale; Jay T Myers; Deborah S Barkauskas; Stefanie Avril; Steven M Chirieleison; Tej K Pareek; Derek W Abbott; Duncan S Stearns; John J Letterio; Alex Y Huang; Agne Petrosiute
Journal:  Science       Date:  2016-07-21       Impact factor: 47.728

5.  Tumour suppressor TRIM33 targets nuclear β-catenin degradation.

Authors:  Jianfei Xue; Yaohui Chen; Yamei Wu; Zhongyong Wang; Aidong Zhou; Sicong Zhang; Kangyu Lin; Kenneth Aldape; Sadhan Majumder; Zhimin Lu; Suyun Huang
Journal:  Nat Commun       Date:  2015-02-02       Impact factor: 14.919

6.  Hallmarks of glioblastoma: a systematic review.

Authors:  Dorte Schou Nørøxe; Hans Skovgaard Poulsen; Ulrik Lassen
Journal:  ESMO Open       Date:  2017-02-22

7.  Screening and authentication of molecular markers in malignant glioblastoma based on gene expression profiles.

Authors:  Yang-Fan Zou; Ling-Bing Meng; Zhao-Kai He; Chen-Hao Hu; Meng-Jie Shan; Deng-Yuan Wang; Xin Yu
Journal:  Oncol Lett       Date:  2019-09-04       Impact factor: 2.967

8.  Systematic identification of lncRNA-based prognostic biomarkers for glioblastoma.

Authors:  Mingdong Li; Shengrong Long; Jinqu Hu; Zan Wang; Chao Geng; Shaowu Ou
Journal:  Aging (Albany NY)       Date:  2019-11-06       Impact factor: 5.682

9.  Chinese Glioma Genome Atlas (CGGA): A Comprehensive Resource with Functional Genomic Data from Chinese Glioma Patients.

Authors:  Zheng Zhao; Ke-Nan Zhang; Qiangwei Wang; Guanzhang Li; Fan Zeng; Ying Zhang; Fan Wu; Ruichao Chai; Zheng Wang; Chuanbao Zhang; Wei Zhang; Zhaoshi Bao; Tao Jiang
Journal:  Genomics Proteomics Bioinformatics       Date:  2021-03-02       Impact factor: 7.691

10.  AR ubiquitination induced by the curcumin analog suppresses growth of temozolomide-resistant glioblastoma through disrupting GPX4-Mediated redox homeostasis.

Authors:  Tzu-Chi Chen; Jian-Ying Chuang; Chiung-Yuan Ko; Tzu-Jen Kao; Pei-Yu Yang; Chun-Hui Yu; Ming-Sheng Liu; Siou-Lian Hu; Yu-Ting Tsai; Hardy Chan; Wen-Chang Chang; Tsung-I Hsu
Journal:  Redox Biol       Date:  2019-12-26       Impact factor: 11.799

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  1 in total

1.  Exploring the multidimensional heterogeneities of glioblastoma multiforme based on sample-specific edge perturbation in gene interaction network.

Authors:  Jianglin Zheng; Yue Qiu; Zhipeng Wu; Xuan Wang; Xiaobing Jiang
Journal:  Front Immunol       Date:  2022-08-29       Impact factor: 8.786

  1 in total

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