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Literature DB >> 33795878

SNT: a unifying toolbox for quantification of neuronal anatomy.

Cameron Arshadi¹, Ulrik Günther^2,3,4, Mark Eddison¹, Kyle I S Harrington^1,5,6, Tiago A Ferreira⁷.

Abstract

SNT is an end-to-end framework for neuronal morphometry and whole-brain connectomics that supports tracing, proof-editing, visualization, quantification and modeling of neuroanatomy. With an open architecture, a large user base, community-based documentation, support for complex imagery and several model organisms, SNT is a flexible resource for the broad neuroscience community. SNT is both a desktop application and multi-language scripting library, and it is available through the Fiji distribution of ImageJ.

Entities: Chemical

Mesh：

Year: 2021 PMID： 33795878 DOI： 10.1038/s41592-021-01105-7

Source DB: PubMed Journal: Nat Methods ISSN： 1548-7091 Impact factor: 28.547

2 in total

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Authors: David Legland; Ignacio Arganda-Carreras; Philippe Andrey
Journal: Bioinformatics Date: 2016-07-13 Impact factor: 6.937

2. Expansion Microscopy: Protocols for Imaging Proteins and RNA in Cells and Tissues.

Authors: Shoh M Asano; Ruixuan Gao; Asmamaw T Wassie; Paul W Tillberg; Fei Chen; Edward S Boyden
Journal: Curr Protoc Cell Biol Date: 2018-08-02

2 in total

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Authors: Tasha Lane; Tifany Burnett; Barry Stein; Peter R Tupa; Amelia Tebbe; Hisako Masuda
Journal: Arch Microbiol Date: 2022-07-27 Impact factor: 2.667

2. Differences in spike generation instead of synaptic inputs determine the feature selectivity of two retinal cell types.

Authors: Sophia Wienbar; Gregory William Schwartz
Journal: Neuron Date: 2022-05-03 Impact factor: 18.688

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Authors: Mona Schreiber; Yixuan Gao; Natalie Koch; Joerg Fuchs; Stefan Heckmann; Axel Himmelbach; Andreas Börner; Hakan Özkan; Andreas Maurer; Nils Stein; Martin Mascher; Steven Dreissig
Journal: Mol Biol Evol Date: 2022-06-11 Impact factor: 8.800

4. nAdder: A scale-space approach for the 3D analysis of neuronal traces.

Authors: Minh Son Phan; Katherine Matho; Emmanuel Beaurepaire; Jean Livet; Anatole Chessel
Journal: PLoS Comput Biol Date: 2022-07-05 Impact factor: 4.779

Review 5. Smart imaging to empower brain-wide neuroscience at single-cell levels.

Authors: Shuxia Guo; Jie Xue; Jian Liu; Xiangqiao Ye; Yichen Guo; Di Liu; Xuan Zhao; Feng Xiong; Xiaofeng Han; Hanchuan Peng
Journal: Brain Inform Date: 2022-05-11

6. Excitable Axonal Domains Adapt to Sensory Deprivation in the Olfactory System.

Authors: Nicholas M George; Arianna Gentile Polese; Laetitia Merle; Wendy B Macklin; Diego Restrepo
Journal: J Neurosci Date: 2022-01-12 Impact factor: 6.709

7. Contribution of Interneuron Subtype-Specific GABAergic Signaling to Emergent Sensory Processing in Mouse Somatosensory Whisker Barrel Cortex.

Authors: Liad J Baruchin; Filippo Ghezzi; Michael M Kohl; Simon J B Butt
Journal: Cereb Cortex Date: 2022-06-07 Impact factor: 4.861