Literature DB >> 33793906

WARPP-web application for the research of parasitic plants.

Lara M Kösters1,2, Sarah Wiechers3, Peter Lyko1,2, Kai F Müller3, Susann Wicke1,2.   

Abstract

The lifestyle of parasitic plants is associated with peculiar morphological, genetic, and physiological adaptations that existing online plant-specific resources fail to adequately represent. Here, we introduce the Web Application for the Research of Parasitic Plants (WARPP) as an online resource dedicated to advancing research and development of parasitic plant biology. WARPP is a framework to facilitate international efforts by providing a central hub of curated evolutionary, ecological, and genetic data. The first version of WARPP provides a community hub for researchers to test this web application, for which curated data revolving around the economically important Broomrape family (Orobanchaceae) is readily accessible. The initial set of WARPP online tools includes a genome browser that centralizes genomic information for sequenced parasitic plant genomes, an orthogroup summary detailing the presence and absence of orthologous genes in parasites compared with nonparasitic plants, and an ancestral trait explorer showing the evolution of life-history preferences along phylogenies. WARPP represents a project under active development and relies on the scientific community to populate the web app's database and further the development of new analysis tools. The first version of WARPP can be securely accessed at https://parasiticplants.app. The source code is licensed under GNU GPLv2 and is available at https://github.com/wickeLab/WARPP. © American Society of Plant Biologists 2021. All rights reserved. For permissions, please email: journals.permissions@oup.com.

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Mesh:

Year:  2021        PMID: 33793906      PMCID: PMC8133606          DOI: 10.1093/plphys/kiaa105

Source DB:  PubMed          Journal:  Plant Physiol        ISSN: 0032-0889            Impact factor:   8.340


  16 in total

1.  Massive intracellular gene transfer during plastid genome reduction in nongreen Orobanchaceae.

Authors:  Natalie Cusimano; Susann Wicke
Journal:  New Phytol       Date:  2015-12-16       Impact factor: 10.151

2.  Plastid genome structure and loss of photosynthetic ability in the parasitic genus Cuscuta.

Authors:  Meredith J W Revill; Susan Stanley; Julian M Hibberd
Journal:  J Exp Bot       Date:  2005-08-01       Impact factor: 6.992

3.  Horizontal gene transfer is more frequent with increased heterotrophy and contributes to parasite adaptation.

Authors:  Zhenzhen Yang; Yeting Zhang; Eric K Wafula; Loren A Honaas; Paula E Ralph; Sam Jones; Christopher R Clarke; Siming Liu; Chun Su; Huiting Zhang; Naomi S Altman; Stephan C Schuster; Michael P Timko; John I Yoder; James H Westwood; Claude W dePamphilis
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-24       Impact factor: 11.205

4.  Genome Sequence of Striga asiatica Provides Insight into the Evolution of Plant Parasitism.

Authors:  Satoko Yoshida; Seungill Kim; Eric K Wafula; Jaakko Tanskanen; Yong-Min Kim; Loren Honaas; Zhenzhen Yang; Thomas Spallek; Caitlin E Conn; Yasunori Ichihashi; Kyeongchae Cheong; Songkui Cui; Joshua P Der; Heidrun Gundlach; Yuannian Jiao; Chiaki Hori; Juliane K Ishida; Hiroyuki Kasahara; Takatoshi Kiba; Myung-Shin Kim; Namjin Koo; Anuphon Laohavisit; Yong-Hwan Lee; Shelley Lumba; Peter McCourt; Jenny C Mortimer; J Musembi Mutuku; Takahito Nomura; Yuko Sasaki-Sekimoto; Yoshiya Seto; Yu Wang; Takanori Wakatake; Hitoshi Sakakibara; Taku Demura; Shinjiro Yamaguchi; Koichi Yoneyama; Ri-Ichiroh Manabe; David C Nelson; Alan H Schulman; Michael P Timko; Claude W dePamphilis; Doil Choi; Ken Shirasu
Journal:  Curr Biol       Date:  2019-09-12       Impact factor: 10.834

5.  Mechanisms of functional and physical genome reduction in photosynthetic and nonphotosynthetic parasitic plants of the broomrape family.

Authors:  Susann Wicke; Kai F Müller; Claude W de Pamphilis; Dietmar Quandt; Norman J Wickett; Yan Zhang; Susanne S Renner; Gerald M Schneeweiss
Journal:  Plant Cell       Date:  2013-10-18       Impact factor: 11.277

6.  Comparative transcriptome analyses reveal core parasitism genes and suggest gene duplication and repurposing as sources of structural novelty.

Authors:  Zhenzhen Yang; Eric K Wafula; Loren A Honaas; Huiting Zhang; Malay Das; Monica Fernandez-Aparicio; Kan Huang; Pradeepa C G Bandaranayake; Biao Wu; Joshua P Der; Christopher R Clarke; Paula E Ralph; Lena Landherr; Naomi S Altman; Michael P Timko; John I Yoder; James H Westwood; Claude W dePamphilis
Journal:  Mol Biol Evol       Date:  2014-12-21       Impact factor: 16.240

7.  Footprints of parasitism in the genome of the parasitic flowering plant Cuscuta campestris.

Authors:  Alexander Vogel; Rainer Schwacke; Alisandra K Denton; Björn Usadel; Julien Hollmann; Karsten Fischer; Anthony Bolger; Maximilian H-W Schmidt; Marie E Bolger; Heidrun Gundlach; Klaus F X Mayer; Hanna Weiss-Schneeweiss; Eva M Temsch; Kirsten Krause
Journal:  Nat Commun       Date:  2018-06-28       Impact factor: 14.919

8.  Functional genomics of a generalist parasitic plant: laser microdissection of host-parasite interface reveals host-specific patterns of parasite gene expression.

Authors:  Loren A Honaas; Eric K Wafula; Zhenzhen Yang; Joshua P Der; Norman J Wickett; Naomi S Altman; Christopher G Taylor; John I Yoder; Michael P Timko; James H Westwood; Claude W dePamphilis
Journal:  BMC Plant Biol       Date:  2013-01-09       Impact factor: 4.215

9.  A high-throughput seed germination assay for root parasitic plants.

Authors:  Jean-Bernard Pouvreau; Zachary Gaudin; Bathilde Auger; Marc-Marie Lechat; Mathieu Gauthier; Philippe Delavault; Philippe Simier
Journal:  Plant Methods       Date:  2013-08-06       Impact factor: 4.993

10.  Large-scale gene losses underlie the genome evolution of parasitic plant Cuscuta australis.

Authors:  Guiling Sun; Yuxing Xu; Hui Liu; Ting Sun; Jingxiong Zhang; Christian Hettenhausen; Guojing Shen; Jinfeng Qi; Yan Qin; Jing Li; Lei Wang; Wei Chang; Zhenhua Guo; Ian T Baldwin; Jianqiang Wu
Journal:  Nat Commun       Date:  2018-07-11       Impact factor: 14.919

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  1 in total

1.  Genomic reconfiguration in parasitic plants involves considerable gene losses alongside global genome size inflation and gene births.

Authors:  Peter Lyko; Susann Wicke
Journal:  Plant Physiol       Date:  2021-07-06       Impact factor: 8.340

  1 in total

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