Literature DB >> 33793861

Anno genominis XX: 20 years of Arabidopsis genomics.

Nicholas J Provart1, Siobhan M Brady2, Geraint Parry3, Robert J Schmitz4, Christine Queitsch5,6, Dario Bonetta7, Jamie Waese1, Korbinian Schneeberger8,9, Ann E Loraine10.   

Abstract

Twenty years ago, the Arabidopsis thaliana genome sequence was published. This was an important moment as it was the first sequenced plant genome and explicitly brought plant science into the genomics era. At the time, this was not only an outstanding technological achievement, but it was characterized by a superb global collaboration. The Arabidopsis genome was the seed for plant genomic research. Here, we review the development of numerous resources based on the genome that have enabled discoveries across plant species, which has enhanced our understanding of how plants function and interact with their environments. � American Society of Plant Biologists 2020. All rights reserved. For permissions, please email: journals.permissions@oup.com.

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Year:  2021        PMID: 33793861      PMCID: PMC8226293          DOI: 10.1093/plcell/koaa038

Source DB:  PubMed          Journal:  Plant Cell        ISSN: 1040-4651            Impact factor:   12.085


  153 in total

1.  Chromosomal subunits in active genes have an altered conformation.

Authors:  H Weintraub; M Groudine
Journal:  Science       Date:  1976-09-03       Impact factor: 47.728

2.  ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology.

Authors:  Jamie Waese; Jim Fan; Asher Pasha; Hans Yu; Geoffrey Fucile; Ruian Shi; Matthew Cumming; Lawrence A Kelley; Michael J Sternberg; Vivek Krishnakumar; Erik Ferlanti; Jason Miller; Chris Town; Wolfgang Stuerzlinger; Nicholas J Provart
Journal:  Plant Cell       Date:  2017-08-14       Impact factor: 11.277

3.  The Reference Genome of Tea Plant and Resequencing of 81 Diverse Accessions Provide Insights into Its Genome Evolution and Adaptation.

Authors:  Enhua Xia; Wei Tong; Yan Hou; Yanlin An; Linbo Chen; Qiong Wu; Yunlong Liu; Jie Yu; Fangdong Li; Ruopei Li; Penghui Li; Huijuan Zhao; Ruoheng Ge; Jin Huang; Ali Inayat Mallano; Yanrui Zhang; Shengrui Liu; Weiwei Deng; Chuankui Song; Zhaoliang Zhang; Jian Zhao; Shu Wei; Zhengzhu Zhang; Tao Xia; Chaoling Wei; Xiaochun Wan
Journal:  Mol Plant       Date:  2020-04-27       Impact factor: 13.164

4.  Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana.

Authors:  Xiaoyu Zhang; Yana V Bernatavichute; Shawn Cokus; Matteo Pellegrini; Steven E Jacobsen
Journal:  Genome Biol       Date:  2009-06-09       Impact factor: 13.583

5.  A mesoscale abscisic acid hormone interactome reveals a dynamic signaling landscape in Arabidopsis.

Authors:  Shelley Lumba; Shigeo Toh; Louis-François Handfield; Michael Swan; Raymond Liu; Ji-Young Youn; Sean R Cutler; Rajagopal Subramaniam; Nicholas Provart; Alan Moses; Darrell Desveaux; Peter McCourt
Journal:  Dev Cell       Date:  2014-05-12       Impact factor: 12.270

6.  Genome-wide network model capturing seed germination reveals coordinated regulation of plant cellular phase transitions.

Authors:  George W Bassel; Hui Lan; Enrico Glaab; Daniel J Gibbs; Tanja Gerjets; Natalio Krasnogor; Anthony J Bonner; Michael J Holdsworth; Nicholas J Provart
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-18       Impact factor: 11.205

7.  Genome-wide mapping of transcriptional enhancer candidates using DNA and chromatin features in maize.

Authors:  Rurika Oka; Johan Zicola; Blaise Weber; Sarah N Anderson; Charlie Hodgman; Jonathan I Gent; Jan-Jaap Wesselink; Nathan M Springer; Huub C J Hoefsloot; Franziska Turck; Maike Stam
Journal:  Genome Biol       Date:  2017-07-21       Impact factor: 13.583

8.  Dynamics of Gene Expression in Single Root Cells of Arabidopsis thaliana.

Authors:  Ken Jean-Baptiste; José L McFaline-Figueroa; Cristina M Alexandre; Michael W Dorrity; Lauren Saunders; Kerry L Bubb; Cole Trapnell; Stanley Fields; Christine Queitsch; Josh T Cuperus
Journal:  Plant Cell       Date:  2019-03-28       Impact factor: 11.277

9.  An expansive human regulatory lexicon encoded in transcription factor footprints.

Authors:  Shane Neph; Jeff Vierstra; Andrew B Stergachis; Alex P Reynolds; Eric Haugen; Benjamin Vernot; Robert E Thurman; Sam John; Richard Sandstrom; Audra K Johnson; Matthew T Maurano; Richard Humbert; Eric Rynes; Hao Wang; Shinny Vong; Kristen Lee; Daniel Bates; Morgan Diegel; Vaughn Roach; Douglas Dunn; Jun Neri; Anthony Schafer; R Scott Hansen; Tanya Kutyavin; Erika Giste; Molly Weaver; Theresa Canfield; Peter Sabo; Miaohua Zhang; Gayathri Balasundaram; Rachel Byron; Michael J MacCoss; Joshua M Akey; M A Bender; Mark Groudine; Rajinder Kaul; John A Stamatoyannopoulos
Journal:  Nature       Date:  2012-09-06       Impact factor: 49.962

10.  Single-cell RNA-seq analysis reveals ploidy-dependent and cell-specific transcriptome changes in Arabidopsis female gametophytes.

Authors:  Qingxin Song; Atsumi Ando; Ning Jiang; Yoko Ikeda; Z Jeffrey Chen
Journal:  Genome Biol       Date:  2020-07-22       Impact factor: 13.583

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  1 in total

1.  Focus on the biology of plant genomes.

Authors:  Nancy A Eckardt; James A Birchler; Siobhán M Brady; C Robin Buell; James H Leebens-Mack; Blake C Meyers
Journal:  Plant Cell       Date:  2021-05-31       Impact factor: 11.277

  1 in total

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