| Literature DB >> 33789703 |
Xiude Fan1, Bin Zhu2, Masoud Nouri-Vaskeh3, Chunguo Jiang4, Xiaokai Feng4, Kyle Poulsen5, Behzad Baradaran3, Jiansong Fang6,7, Erfan Ahmadi Ade3, Akbar Sharifi8, Zhigang Zhao2, Qunying Han1, Yong Zhang9, Liming Zhang10, Zhengwen Liu11.
Abstract
BACKGROUND: Risk scores are needed to predict the risk of death in severe coronavirus disease 2019 (COVID-19) patients in the context of rapid disease progression.Entities:
Keywords: Hospital mortality; Prediction; SARS-CoV-2; Severe COVID-19
Mesh:
Substances:
Year: 2021 PMID: 33789703 PMCID: PMC8011050 DOI: 10.1186/s12985-021-01538-8
Source DB: PubMed Journal: Virol J ISSN: 1743-422X Impact factor: 4.099
Fig. 1Flow chart of the study population selection and analysis method
Clinical characteristics of the severe patients with COVID-19
| Variables | Training dataset (China data) n = 96 | Test dataset (Iran data) n = 43 | |
|---|---|---|---|
| Age (years), mean (SE) | 63.47 (1.36) | 63.37 (2.70) | 0.972 |
| Male, n (%) | 49 (51.0) | 30 (69.8) | 0.039 |
| Smoking history, n (%) | 1 (1.0) | 2 (4.7) | 0.064 |
| Symptoms on admission, n (%) | |||
| Fever | 86 (89.6) | 20 (46.5) | < 0.001 |
| Cough | 78 (81.3) | 23 (53.5) | 0.222 |
| Fatigue | 86 (89.6) | 27 (42.2) | < 0.001 |
| Shortness of breath | 70 (72.9) | 24 (55.8) | 0.983 |
| Headache | 17 (17.7) | 4 (9.3) | 0.453 |
| Diarrhea | 20 (20.8) | 1 (2.3) | 0.017 |
| Coexisting disorder, n (%) | |||
| Hypertension | 33 (34.4) | 12 (27.9) | 0.748 |
| Diabetes | 16 (16.7) | 8 (18.6) | 0.296 |
| Chronic obstructive pulmonary disease | 3 (3.1) | 2 (4.7) | 0.444 |
| Cerebral infarction | 1 (1.0) | 1 (2.3) | 0.42 |
| Coronary heart disease | 10 (10.4) | 0 | 0.057 |
| Chronic kidney disease | 3 (3.1) | 1 (2.3) | 0.768 |
| Chronic liver disease | 0 | 0 | – |
| Respiratory rate, mean (SE) | 27.24 (0.57) | 22.76 (1.09) | < 0.001 |
| Heart rate, mean (SE) | 92.89 (1.749) | 90.34 (1.88) | 0.323 |
| In-hospital deaths, n (%) | 31 (32.3) | 13 (30.2) | 0.809 |
Fig. 2Feature selection to find variables with respect to the hospital mortality of severe patients. SaO oxygen saturation, WBC white blood cells, NE neutrophil percentage, LY lymphocyte percentage, NLR neutrophils/lymphocytes ratio, HGB hemoglobin, HCT hematocrit, PLT platelets, LDH lactate dehydrogenase, Tbil total bilirubin, Dbil direct bilirubin, ALT alanine aminotransferase, AST aspartate amino transferase, ALB albumin, APTT activated partial thromboplastin time, PT prothrombin time, CRP C-reactive protein, BUN, blood urea nitrogen, Cr serum creatinine, CCr creatinine clearance, CKMB creatine kinase isoenzymes, HDL high density lipoprotein, LDL low density lipoprotein, TC total cholesterol, TG triglyceride, ApoA Apolipoprotein A, ApoB Apolipoprotein B, K serum potassium, Na serum sodium
Predictive capacity of the factors and integrated models for the risk of hospital mortality in severe patients with COVID-19
| Variable | AUC | 95%CI | SE | Sensitivity (%) | Specificity (%) |
|---|---|---|---|---|---|
| Training data from China cohort | |||||
| LDH (U/L) | 0.880 | 0.813–0.948 | 0.034 | 97 | 71 |
| NE (%) | 0.879 | 0.812–0.946 | 0.034 | 84 | 82 |
| SaO2 (%) | 0.849 | 0.758–0.940 | 0.046 | 87 | 78 |
| LY (%) | 0.852 | 0.776–0.929 | 0.039 | 77 | 80 |
| NLR | 0.858 | 0.783–0.933 | 0.038 | 81 | 82 |
| CKMB (U/L) | 0.829 | 0.746–0.912 | 0.042 | 87 | 69 |
| D-dimer (μg/mL) | 0.763 | 0.641–0.885 | 0.062 | 73 | 88 |
| CRP (μg/mL) | 0.807 | 0.723–0.892 | 0.043 | 100 | 51 |
| All variables with information gain > 0.2 | |||||
| LDH + NE + SaO2 + LY + NLR + CKMB + D-dimer + CRP | 0.945 | 0.897–0.992 | 0.024 | 97 | 83 |
| NE was selected for modeling | |||||
| LDH + NE + SaO2 + CKMB + D-dimer + CRP | 0.945 | 0.900–0.989 | 0.023 | 93 | 84 |
| LDH + NE + SaO2 + CKMB + D-dimer | 0.942 | 0.898–0.987 | 0.023 | 97 | 78 |
| LDH + NE + SaO2 + CKMB | 0.937 | 0.887–0.988 | 0.026 | 83 | 94 |
| LDH + NE + SaO2 (NSL risk score) | 0.932 | 0.884–0.981 | 0.025 | 97 | 78 |
| LDH + NE (NL risk score) | 0.903 | 0.843–0.963 | 0.031 | 94 | 82 |
| LY was selected for modeling | |||||
| LDH + SaO2 + LY + CKMB + D-dimer + CRP | 0.948 | 0.904–0.992 | 0.022 | 97 | 84 |
| LDH + SaO2 + LY + CKMB + D-dimer | 0.944 | 0.901–0.987 | 0.022 | 86 | 88 |
| LDH + SaO2 + LY + CKMB | 0.932 | 0.880–0.984 | 0.026 | 97 | 77 |
| LDH + SaO2 + LY | 0.934 | 0.886–0.982 | 0.025 | 90 | 88 |
| LDH + LY | 0.903 | 0.843–0.964 | 0.031 | 90 | 82 |
| NLR was selected for modeling | |||||
| LDH + SaO2 + NLR + CKMB + D-dimer + CRP | 0.930 | 0.866–0.995 | 0.033 | 83 | 95 |
| LDH + SaO2 + NLR + CKMB + D-dimer | 0.945 | 0.901–0.989 | 0.022 | 79 | 95 |
| LDH + SaO2 + NLR + CKMB | 0.933 | 0.882–0.983 | 0.026 | 77 | 97 |
| LDH + SaO2 + NLR | 0.933 | 0.883–0.971 | 0.025 | 87 | 88 |
| LDH + NLR | 0.919 | 0.866–0.971 | 0.027 | 90 | 82 |
| LDH wasn’t selected for modeling | |||||
| NE + SaO2 | 0.919 | 0.865–0.972 | 0.027 | 97 | 78 |
| Test data from Iran cohort | |||||
| LDH (U/L) | 0.746 | (0.574–0.919) | 0.0881 | 77 | 70 |
| NE (%) | 0.851 | 0.719–0.984 | 0.068 | 85 | 82 |
| SaO2 (%) | 0.869 | 0.702–1.000 | 0.085 | 85 | 97 |
| Combined models | |||||
| LDH + NE + SaO2 (NSL risk score) | 0.910 | 0.758–1.000 | 0.077 | 92 | 96 |
| LDH + NE (NL risk score) | 0.871 | 0.734–1.000 | 0.071 | 92 | 82 |
LDH lactate dehydrogenase, NE neutrophil percentage, SaO oxygen saturation, LY lymphocyte percentage, NLR neutrophils/lymphocytes ratio, CKMB creatine kinase myocardial bound, CRP C-reactive protein, AUC area under the curve
Fig. 3Nomograms for integrated models to predict hospital mortality and d the corresponding calibration plots. Nomgrams of the NSL model (a) and NL model (b) to estimate the risk of death in severe patients with COVID-19. Calibration plot showing the probability of death. Plots for NSL model in training (c) and test dataset (d). Calibration plots for NL model in training (e) and test dataset (f). The nomogram-estimated mortality is plotted on the x-axis, and the actual mortality is plotted on the y-axis. The diagonal dotted line is a perfect estimation by an ideal model. The solid lines are the performance of the nomogram, and closer alignment with the dashed diagonal lines indicates a better estimate
Algorithm to estimate risk for hospital mortality using total points for risk scores with logistic regression analysis in the severe patients with COVID-19 from training dataset
| Variables | Categories | Reference value (Wij) | Bi | Regression units Βi (Wij—WiREF) | Points assigned Βi (Wij—WiREF)/B |
|---|---|---|---|---|---|
| NSL risk score (NE + SaO2 + LDH) | |||||
| NE (%) | 0.127 | ||||
| ≤ 60 | 55 (WiREF) | 0.000 | 0 | ||
| 60.1–70 | 65 | 1.270 | 4 | ||
| 70.1–80 | 75 | 2.540 | 8 | ||
| 80.1–90 | 85 | 3.810 | 12 | ||
| ≥ 90.1 | 95 | 5.080 | 16 | ||
| SaO2 (%) | -0.175 | ||||
| 100–96 | 98 (WiREF) | 0.000 | 0 | ||
| 95–91 | 93 | 0.875 | 3 | ||
| 90–86 | 88 | 1.750 | 6 | ||
| ≤ 85 | 83 | 2.625 | 9 | ||
| LDH (U/L) | 0.003 | ||||
| ≤ 221 | 171 (WiREF) | 0.000 | 0 | ||
| 222–321 | 271 | 0.300 | 1 | ||
| 322–421 | 371 | 0.600 | 2 | ||
| 422–521 | 471 | 0.900 | 3 | ||
| 522–621 | 571 | 1.200 | 4 | ||
| 622–721 | 671 | 1.500 | 5 | ||
| 722–821 | 771 | 1.800 | 6 | ||
| 822–921 | 871 | 2.100 | 7 | ||
| 922–1021 | 971 | 2.400 | 8 | ||
| ≥ 1022 | 1071 | 2.700 | 9 | ||
| NL risk score (NE + LDH) | |||||
| NE (%) | 0.158 | ||||
| ≤ 60 | 55 (WiREF) | 0.000 | 0 | ||
| 60.1–70 | 65 | 1.580 | 4 | ||
| 70.1–80 | 75 | 3.160 | 8 | ||
| 80.1–90 | 85 | 4.740 | 12 | ||
| ≥ 90.1 | 95 | 6.320 | 16 | ||
| LDH (U/L) | 0.004 | ||||
| ≤ 221 | 171 (WiREF) | 0 | 0 | ||
| 222–321 | 271 | 0.400 | 1 | ||
| 322–421 | 371 | 0.800 | 2 | ||
| 422–521 | 471 | 1.200 | 3 | ||
| 522–621 | 571 | 1.600 | 4 | ||
| 622–721 | 671 | 2.000 | 5 | ||
| 722–821 | 771 | 2.400 | 6 | ||
| 822–921 | 871 | 2.800 | 7 | ||
| 922–1021 | 971 | 3.200 | 8 | ||
| ≥ 1022 | 1071 | 3.600 | 9 |
Wij, reference value for each category of risk factors in risk score; WiREF, the base category for each risk factor was used as the basic value for that factor and assigned 0 point. Bi, the regression coeffcient of each risk factor from logistic regression; B, the smallest regression units or the smallest units divided by some constant (B = 0.3 for NSL risk score and B = 0.4 for NL risk score)
The risk of in-hospital death corresponding to the sum of points obtained from integrated models
| NSL risk score (NE + SaO2 + LDH) | NL risk score (NE + LDH) | ||
|---|---|---|---|
| Point of total | Estimate of risk of hospital mortality (%) | Point of total | Estimate of risk of hospital mortality (%) |
| 0 | 0.18 | 0 | 0.22 |
| 1 | 0.25 | 1 | 0.33 |
| 2 | 0.33 | 2 | 0.49 |
| 3 | 0.45 | 3 | 0.74 |
| 4 | 0.61 | 4 | 1.09 |
| 5 | 0.82 | 5 | 1.62 |
| 6 | 1.10 | 6 | 2.40 |
| 7 | 1.48 | 7 | 3.54 |
| 8 | 1.99 | 8 | 5.20 |
| 9 | 2.67 | 9 | 7.56 |
| 10 | 3.57 | 10 | 10.87 |
| 11 | 4.76 | 11 | 15.39 |
| 12 | 6.32 | 12 | 21.35 |
| 13 | 8.34 | 13 | 28.82 |
| 14 | 10.94 | 14 | 37.66 |
| 15 | 14.22 | 15 | 47.40 |
| 16 | 18.29 | 16 | 57.35 |
| 17 | 23.20 | 17 | 66.73 |
| 18 | 28.97 | 18 | 74.95 |
| 19 | 35.50 | 19 | 81.70 |
| 20 | 42.63 | 20 | 86.94 |
| 21 | 50.07 | 21 | 90.85 |
| 22 | 57.52 | 22 | 93.68 |
| 23 | 64.63 | 23 | 95.67 |
| 24 | 71.16 | 24 | 97.06 |
| 25 | 76.91 | 25 | 98.01 |
| 26 | 81.80 | ||
| 27 | 85.85 | ||
| 28 | 89.12 | ||
| 29 | 91.71 | ||
| 30 | 93.72 | ||
| 31 | 95.27 | ||
| 32 | 96.45 | ||
| 33 | 97.35 | ||
| 34 | 98.02 | ||