Literature DB >> 33784237

Rapid Detection of SARS-CoV-2 Variants of Concern, Including B.1.1.28/P.1, British Columbia, Canada.

Nancy Matic, Christopher F Lowe, Gordon Ritchie, Aleksandra Stefanovic, Tanya Lawson, Willson Jang, Matthew Young, Winnie Dong, Zabrina L Brumme, Chanson J Brumme, Victor Leung, Marc G Romney.   

Abstract

To screen all severe acute respiratory syndrome coronavirus 2-positive samples in Vancouver, British Columbia, Canada, and determine whether they represented variants of concern, we implemented a real-time reverse transcription PCR-based algorithm. We rapidly identified 77 samples with variants: 57 with B.1.1.7, 7 with B.1.351, and an epidemiologic cluster of 13 with B.1.1.28/P.1.

Entities:  

Keywords:  2019 novel coronavirus disease; B.1.1.28/P.1; British Columbia; COVID-19; Canada; K417N; N501Y; SARS-CoV-2; coronavirus disease; respiratory infections; severe acute respiratory syndrome coronavirus 2; spike; viruses; zoonoses

Year:  2021        PMID： 33784237     DOI： 10.3201/eid2706.210532

Source DB:  PubMed          Journal:  Emerg Infect Dis        ISSN： 1080-6040            Impact factor:   6.883


  12 in total

1.  Evolving strategy for an evolving virus: Development of real-time PCR assays for detecting all SARS-CoV-2 variants of concern.

Authors:  Kanti Pabbaraju; Nathan Zelyas; Anita Wong; Matthew A Croxen; Tarah Lynch; Emily Buss; Stephanie Murphy; Sandy Shokoples; Jamil Kanji; Graham Tipples
Journal:  J Virol Methods       Date:  2022-05-26       Impact factor: 2.623

2.  Model-based estimation of transmissibility and reinfection of SARS-CoV-2 P.1 variant.

Authors:  Renato Mendes Coutinho; Flavia Maria Darcie Marquitti; Leonardo Souto Ferreira; Marcelo Eduardo Borges; Rafael Lopes Paixão da Silva; Otavio Canton; Tatiana P Portella; Silas Poloni; Caroline Franco; Mateusz M Plucinski; Fernanda C Lessa; Antônio Augusto Moura da Silva; Roberto Andre Kraenkel; Maria Amélia de Sousa Mascena Veras; Paulo Inácio Prado
Journal:  Commun Med (Lond)       Date:  2021-11-15

3.  Mutation-Specific SARS-CoV-2 PCR Screen: Rapid and Accurate Detection of Variants of Concern and the Identification of a Newly Emerging Variant with Spike L452R Mutation.

Authors:  Huanyu Wang; Sophonie Jean; Richard Eltringham; John Madison; Pamela Snyder; Huolin Tu; Daniel M Jones; Amy L Leber
Journal:  J Clin Microbiol       Date:  2021-07-19       Impact factor: 5.948

Review 4.  Clinical and Infection Prevention Applications of Severe Acute Respiratory Syndrome Coronavirus 2 Genotyping: an Infectious Diseases Society of America/American Society for Microbiology Consensus Review Document.

Authors:  Alexander L Greninger; Jennifer Dien Bard; Robert C Colgrove; Erin H Graf; Kimberly E Hanson; Mary K Hayden; Romney M Humphries; Christopher F Lowe; Melissa B Miller; Dylan R Pillai; Daniel D Rhoads; Joseph D Yao; Francesca M Lee
Journal:  J Clin Microbiol       Date:  2021-11-03       Impact factor: 11.677

5.  Rapid Increase in SARS-CoV-2 P.1 Lineage Leading to Codominance with B.1.1.7 Lineage, British Columbia, Canada, January-April 2021.

Authors:  Catherine A Hogan; Agatha N Jassem; Hind Sbihi; Yayuk Joffres; John R Tyson; Kyle Noftall; Marsha Taylor; Tracy Lee; Chris Fjell; Amanda Wilmer; John Galbraith; Marc G Romney; Bonnie Henry; Mel Krajden; Eleni Galanis; Natalie Prystajecky; Linda M N Hoang
Journal:  Emerg Infect Dis       Date:  2021-08-13       Impact factor: 6.883

Review 6.  Clinical and Infection Prevention Applications of Severe Acute Respiratory Syndrome Coronavirus 2 Genotyping: An Infectious Diseases Society of America/American Society for Microbiology Consensus Review Document.

Authors:  Alexander L Greninger; Jennifer Dien Bard; Robert C Colgrove; Erin H Graf; Kimberly E Hanson; Mary K Hayden; Romney M Humphries; Christopher F Lowe; Melissa B Miller; Dylan R Pillai; Daniel D Rhoads; Joseph D Yao; Francesca M Lee
Journal:  Clin Infect Dis       Date:  2022-04-28       Impact factor: 20.999

7.  Rapid Identification of SARS-CoV-2 Variants of Concern Using a Portable peakPCR Platform.

Authors:  Philippe Bechtold; Philipp Wagner; Salome Hosch; Denise Siegrist; Amalia Ruiz-Serrano; Michele Gregorini; Maxmillian Mpina; Florentino Abaga Ondó; Justino Obama; Mitoha Ondo'o Ayekaba; Olivier Engler; Wendelin J Stark; Claudia A Daubenberger; Tobias Schindler
Journal:  Anal Chem       Date:  2021-12-01       Impact factor: 6.986

8.  Breakthrough Infections with Multiple Lineages of SARS-CoV-2 Variants Reveals Continued Risk of Severe Disease in Immunosuppressed Patients.

Authors:  Xufang Deng; Monika Evdokimova; Amornrat O'Brien; Cynthia L Rowe; Nina M Clark; Amanda Harrington; Gail E Reid; Susan L Uprichard; Susan C Baker
Journal:  Viruses       Date:  2021-09-01       Impact factor: 5.048

Review 9.  COVID-19 one year later: a retrospect of CRISPR-Cas system in combating COVID-19.

Authors:  Yan Zhan; Xiang-Ping Li; Ji-Ye Yin
Journal:  Int J Biol Sci       Date:  2021-05-13       Impact factor: 6.580

Review 10.  Current diagnostic approaches to detect two important betacoronaviruses: Middle East respiratory syndrome coronavirus (MERS-CoV) and severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2).

Authors:  Zhi Xiong Chong; Winnie Pui Pui Liew; Hui Kian Ong; Chean Yeah Yong; Chong Seng Shit; Wan Yong Ho; Stephanie Y L Ng; Swee Keong Yeap
Journal:  Pathol Res Pract       Date:  2021-07-24       Impact factor: 3.250
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