Literature DB >> 33782728

Structure, gating and interactions of the voltage-dependent anion channel.

Eszter E Najbauer1, Stefan Becker1, Karin Giller1, Markus Zweckstetter1,2,3, Adam Lange4,5, Claudia Steinem6,7, Bert L de Groot8, Christian Griesinger1, Loren B Andreas9.   

Abstract

The voltage-dependent anion channel (VDAC) is one of the most highly abundant proteins found in the outer mitochondrial membrane, and was one of the earliest discovered. Here we review progress in understanding VDAC function with a focus on its structure, discussing various models proposed for voltage gating as well as potential drug targets to modulate the channel's function. In addition, we explore the sensitivity of VDAC structure to variations in the membrane environment, comparing DMPC-only, DMPC with cholesterol, and near-native lipid compositions, and use magic-angle spinning NMR spectroscopy to locate cholesterol on the outside of the β-barrel. We find that the VDAC protein structure remains unchanged in different membrane compositions, including conditions with cholesterol.

Entities:  

Keywords:  Electrophysiology; Magic-angle spinning; Membrane protein; Molecular dynamics simulations; Solid-state NMR; Voltage dependent anion channel

Year:  2021        PMID: 33782728     DOI: 10.1007/s00249-021-01515-7

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN: 0175-7571            Impact factor:   1.733


  51 in total

Review 1.  VDAC channels.

Authors:  E Blachly-Dyson; M Forte
Journal:  IUBMB Life       Date:  2001 Sep-Nov       Impact factor: 3.885

2.  Selectivity changes in site-directed mutants of the VDAC ion channel: structural implications.

Authors:  E Blachly-Dyson; S Peng; M Colombini; M Forte
Journal:  Science       Date:  1990-03-09       Impact factor: 47.728

3.  Determination of the conformation of the human VDAC1 N-terminal peptide, a protein moiety essential for the functional properties of the pore.

Authors:  Vito De Pinto; Flora Tomasello; Angela Messina; Francesca Guarino; Roland Benz; Diego La Mendola; Antonio Magrì; Danilo Milardi; Giuseppe Pappalardo
Journal:  Chembiochem       Date:  2007-05-07       Impact factor: 3.164

4.  A 3D model of the voltage-dependent anion channel (VDAC).

Authors:  Rita Casadio; Irene Jacoboni; Angela Messina; Vito De Pinto
Journal:  FEBS Lett       Date:  2002-06-05       Impact factor: 4.124

5.  Interaction of non-classical detergents with the mitochondrial porin. A new purification procedure and characterization of the pore-forming unit.

Authors:  V De Pinto; R Benz; F Palmieri
Journal:  Eur J Biochem       Date:  1989-07-15

6.  Mitochondrial translocation contact sites: separation of dynamic and stabilizing elements in formation of a TOM-TIM-preprotein supercomplex.

Authors:  Agnieszka Chacinska; Peter Rehling; Bernard Guiard; Ann E Frazier; Agnes Schulze-Specking; Nikolaus Pfanner; Wolfgang Voos; Chris Meisinger
Journal:  EMBO J       Date:  2003-10-15       Impact factor: 11.598

7.  The Structural Basis for Low Conductance in the Membrane Protein VDAC upon β-NADH Binding and Voltage Gating.

Authors:  Raphael Böhm; Giuseppe Federico Amodeo; Sruthi Murlidaran; Shashank Chavali; Gerhard Wagner; Mathias Winterhalter; Grace Brannigan; Sebastian Hiller
Journal:  Structure       Date:  2019-12-17       Impact factor: 5.006

8.  Structure of the mitochondrial import gate reveals distinct preprotein paths.

Authors:  Yuhei Araiso; Akihisa Tsutsumi; Jian Qiu; Kenichiro Imai; Takuya Shiota; Jiyao Song; Caroline Lindau; Lena-Sophie Wenz; Haruka Sakaue; Kaori Yunoki; Shin Kawano; Junko Suzuki; Marilena Wischnewski; Conny Schütze; Hirotaka Ariyama; Toshio Ando; Thomas Becker; Trevor Lithgow; Nils Wiedemann; Nikolaus Pfanner; Masahide Kikkawa; Toshiya Endo
Journal:  Nature       Date:  2019-10-10       Impact factor: 49.962

9.  Regulation of VDAC trafficking modulates cell death.

Authors:  Ashvini K Dubey; Ashwini Godbole; M K Mathew
Journal:  Cell Death Discov       Date:  2016-12-12

10.  Voltage Dependence of Conformational Dynamics and Subconducting States of VDAC-1.

Authors:  Rodolfo Briones; Conrad Weichbrodt; Licia Paltrinieri; Ingo Mey; Saskia Villinger; Karin Giller; Adam Lange; Markus Zweckstetter; Christian Griesinger; Stefan Becker; Claudia Steinem; Bert L de Groot
Journal:  Biophys J       Date:  2016-09-20       Impact factor: 4.033

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  10 in total

Review 1.  1H-Detected Biomolecular NMR under Fast Magic-Angle Spinning.

Authors:  Tanguy Le Marchand; Tobias Schubeis; Marta Bonaccorsi; Piotr Paluch; Daniela Lalli; Andrew J Pell; Loren B Andreas; Kristaps Jaudzems; Jan Stanek; Guido Pintacuda
Journal:  Chem Rev       Date:  2022-05-10       Impact factor: 72.087

Review 2.  Historical Perspective of Pore-Forming Activity Studies of Voltage-Dependent Anion Channel (Eukaryotic or Mitochondrial Porin) Since Its Discovery in the 70th of the Last Century.

Authors:  Roland Benz
Journal:  Front Physiol       Date:  2021-10-26       Impact factor: 4.755

3.  Special issue: Multicomponent lipid membranes-how molecular organisation leads to function.

Authors:  Bert de Groot; Andreas Janshoff; Claudia Steinem; Markus Zweckstetter
Journal:  Eur Biophys J       Date:  2021-03       Impact factor: 1.733

Review 4.  Voltage-Dependent Anion Selective Channel 3: Unraveling Structural and Functional Features of the Least Known Porin Isoform.

Authors:  Simona Reina; Vanessa Checchetto
Journal:  Front Physiol       Date:  2022-01-10       Impact factor: 4.566

5.  The Ionic Selectivity of Lysenin Channels in Open and Sub-Conducting States.

Authors:  Andrew Bogard; Pangaea W Finn; Fulton McKinney; Ilinca M Flacau; Aviana R Smith; Rosey Whiting; Daniel Fologea
Journal:  Membranes (Basel)       Date:  2021-11-19

6.  Proteomic Shifts Reflecting Oxidative Stress and Reduced Capacity for Protein Synthesis, and Alterations to Mitochondrial Membranes in Neurospora crassa Lacking VDAC.

Authors:  Sabbir R Shuvo; Anna Motnenko; Oleg V Krokhin; Victor Spicer; Deborah A Court
Journal:  Microorganisms       Date:  2022-01-18

7.  Structure and Gating Behavior of the Human Integral Membrane Protein VDAC1 in a Lipid Bilayer.

Authors:  Eszter E Najbauer; Kumar Tekwani Movellan; Karin Giller; Roland Benz; Stefan Becker; Christian Griesinger; Loren B Andreas
Journal:  J Am Chem Soc       Date:  2022-02-14       Impact factor: 15.419

8.  A Deep Dive into VDAC1 Conformational Diversity Using All-Atom Simulations Provides New Insights into the Structural Origin of the Closed States.

Authors:  Jordane Preto; Hubert Gorny; Isabelle Krimm
Journal:  Int J Mol Sci       Date:  2022-01-21       Impact factor: 5.923

9.  Enteroviral 2B Interacts with VDAC3 to Regulate Reactive Oxygen Species Generation That Is Essential to Viral Replication.

Authors:  Mei-Ling Cheng; Chien-Hsiang Wu; Kun-Yi Chien; Chien-Hsueh Lai; Guan-Jie Li; Yuan-Yu Liu; Gigin Lin; Hung-Yao Ho
Journal:  Viruses       Date:  2022-08-04       Impact factor: 5.818

Review 10.  The Potential Role of Voltage-Dependent Anion Channel in the Treatment of Parkinson's Disease.

Authors:  Yajie He; Wenjun Wang; Ting Yang; Elizabeth Rosalind Thomas; Rongyang Dai; Xiang Li
Journal:  Oxid Med Cell Longev       Date:  2022-10-05       Impact factor: 7.310

  10 in total

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