Literature DB >> 33782609

User-friendly, scalable tools and workflows for single-cell RNA-seq analysis.

Pablo Moreno1, Ni Huang2,3, Jonathan R Manning2, Suhaib Mohammed2, Andrey Solovyev2, Krzysztof Polanski3, Wendi Bacon2, Ruben Chazarra2, Carlos Talavera-López2,3, Maria A Doyle4,5, Guilhem Marnier2, Björn Grüning6, Helena Rasche6, Nancy George2, Silvie Korena Fexova2, Mohamed Alibi2, Zhichao Miao2, Yasset Perez-Riverol2, Maximilian Haeussler7, Alvis Brazma2, Sarah Teichmann3, Kerstin B Meyer3, Irene Papatheodorou8.   

Abstract

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Year:  2021        PMID： 33782609      PMCID： PMC8299072          DOI： 10.1038/s41592-021-01102-w

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  1 in total

1.  Scater: pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in R.

Authors:  Davis J McCarthy; Kieran R Campbell; Aaron T L Lun; Quin F Wills
Journal:  Bioinformatics       Date:  2017-04-15       Impact factor: 6.937
  1 in total
  3 in total

1.  The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update.

Authors: 
Journal:  Nucleic Acids Res       Date:  2022-04-21       Impact factor: 19.160

2.  Expression Atlas update: gene and protein expression in multiple species.

Authors:  Pablo Moreno; Silvie Fexova; Nancy George; Jonathan R Manning; Zhichiao Miao; Suhaib Mohammed; Alfonso Muñoz-Pomer; Anja Fullgrabe; Yalan Bi; Natassja Bush; Haider Iqbal; Upendra Kumbham; Andrey Solovyev; Lingyun Zhao; Ananth Prakash; David García-Seisdedos; Deepti J Kundu; Shengbo Wang; Mathias Walzer; Laura Clarke; David Osumi-Sutherland; Marcela Karey Tello-Ruiz; Sunita Kumari; Doreen Ware; Jana Eliasova; Mark J Arends; Martijn C Nawijn; Kerstin Meyer; Tony Burdett; John Marioni; Sarah Teichmann; Juan Antonio Vizcaíno; Alvis Brazma; Irene Papatheodorou
Journal:  Nucleic Acids Res       Date:  2022-01-07       Impact factor: 16.971

3.  UCSC Cell Browser: Visualize Your Single-Cell Data.

Authors:  Matthew L Speir; Aparna Bhaduri; Nikolay S Markov; Pablo Moreno; Tomasz J Nowakowski; Irene Papatheodorou; Alex A Pollen; Brian J Raney; Lucas Seninge; W James Kent; Maximilian Haeussler
Journal:  Bioinformatics       Date:  2021-07-09       Impact factor: 6.931
  3 in total

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