Literature DB >> 33779863

Comparison of explicit and mean-field models of cytoskeletal filaments with crosslinking motors.

Adam R Lamson1, Jeffrey M Moore2, Fang Fang3, Matthew A Glaser2, Michael J Shelley3,4, Meredith D Betterton2.   

Abstract

In cells, cytoskeletal filament networks are responsible for cell movement, growth, and division. Filaments in the cytoskeleton are driven and organized by crosslinking molecular motors. In reconstituted cytoskeletal systems, motor activity is responsible for far-from-equilibrium phenomena such as active stress, self-organized flow, and spontaneous nematic defect generation. How microscopic interactions between motors and filaments lead to larger-scale dynamics remains incompletely understood. To build from motor-filament interactions to predict bulk behavior of cytoskeletal systems, more computationally efficient techniques for modeling motor-filament interactions are needed. Here, we derive a coarse-graining hierarchy of explicit and continuum models for crosslinking motors that bind to and walk on filament pairs. We compare the steady-state motor distribution and motor-induced filament motion for the different models and analyze their computational cost. All three models agree well in the limit of fast motor binding kinetics. Evolving a truncated moment expansion of motor density speeds the computation by [Formula: see text]-[Formula: see text] compared to the explicit or continuous-density simulations, suggesting an approach for more efficient simulation of large networks. These tools facilitate further study of motor-filament networks on micrometer to millimeter length scales.

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Year:  2021        PMID: 33779863      PMCID: PMC8220871          DOI: 10.1140/epje/s10189-021-00042-9

Source DB:  PubMed          Journal:  Eur Phys J E Soft Matter        ISSN: 1292-8941            Impact factor:   1.890


  73 in total

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Journal:  Phys Rev Lett       Date:  2000-08-21       Impact factor: 9.161

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Review 3.  Actin dynamics, architecture, and mechanics in cell motility.

Authors:  Laurent Blanchoin; Rajaa Boujemaa-Paterski; Cécile Sykes; Julie Plastino
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4.  Motor Dynamics Underlying Cargo Transport by Pairs of Kinesin-1 and Kinesin-3 Motors.

Authors:  Göker Arpağ; Stephen R Norris; S Iman Mousavi; Virupakshi Soppina; Kristen J Verhey; William O Hancock; Erkan Tüzel
Journal:  Biophys J       Date:  2019-02-05       Impact factor: 4.033

5.  Theory of Cytoskeletal Reorganization during Cross-Linker-Mediated Mitotic Spindle Assembly.

Authors:  Adam R Lamson; Christopher J Edelmaier; Matthew A Glaser; Meredith D Betterton
Journal:  Biophys J       Date:  2019-04-13       Impact factor: 4.033

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Authors:  K Kawaguchi; S Ishiwata
Journal:  Science       Date:  2001-01-26       Impact factor: 47.728

7.  Multiscale modeling and simulation of microtubule-motor-protein assemblies.

Authors:  Tong Gao; Robert Blackwell; Matthew A Glaser; M D Betterton; Michael J Shelley
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2015-12-10

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Authors:  Tim Sanchez; Daniel T N Chen; Stephen J DeCamp; Michael Heymann; Zvonimir Dogic
Journal:  Nature       Date:  2012-11-07       Impact factor: 49.962

9.  An adhesion-dependent switch between mechanisms that determine motile cell shape.

Authors:  Erin L Barnhart; Kun-Chun Lee; Kinneret Keren; Alex Mogilner; Julie A Theriot
Journal:  PLoS Biol       Date:  2011-05-03       Impact factor: 8.029

10.  Reverse engineering of force integration during mitosis in the Drosophila embryo.

Authors:  Roy Wollman; Gul Civelekoglu-Scholey; Jonathan M Scholey; Alex Mogilner
Journal:  Mol Syst Biol       Date:  2008-05-06       Impact factor: 11.429

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  1 in total

1.  Toward the cellular-scale simulation of motor-driven cytoskeletal assemblies.

Authors:  Wen Yan; Saad Ansari; Adam Lamson; Matthew A Glaser; Robert Blackwell; Meredith D Betterton; Michael Shelley
Journal:  Elife       Date:  2022-05-26       Impact factor: 8.713

  1 in total

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