Literature DB >> 33779543

Global epistasis emerges from a generic model of a complex trait.

Gautam Reddy1, Michael M Desai1,2,3,4.   

Abstract

Epistasis between mutations can make adaptation contingent on evolutionary history. Yet despite widespread 'microscopic' epistasis between the mutations involved, microbial evolution experiments show consistent patterns of fitness increase between replicate lines. Recent work shows that this consistency is driven in part by global patterns of diminishing-returns and increasing-costs epistasis, which make mutations systematically less beneficial (or more deleterious) on fitter genetic backgrounds. However, the origin of this 'global' epistasis remains unknown. Here, we show that diminishing-returns and increasing-costs epistasis emerge generically as a consequence of pervasive microscopic epistasis. Our model predicts a specific quantitative relationship between the magnitude of global epistasis and the stochastic effects of microscopic epistasis, which we confirm by reanalyzing existing data. We further show that the distribution of fitness effects takes on a universal form when epistasis is widespread and introduce a novel fitness landscape model to show how phenotypic evolution can be repeatable despite sequence-level stochasticity.
© 2021, Reddy and Desai.

Entities:  

Keywords:  complex trait; epistasis; evolutionary biology; physics of living systems; predictability

Year:  2021        PMID: 33779543     DOI: 10.7554/eLife.64740

Source DB:  PubMed          Journal:  Elife        ISSN: 2050-084X            Impact factor:   8.140


  8 in total

1.  The effect of weak clonal interference on average fitness trajectories in the presence of macroscopic epistasis.

Authors:  Yipei Guo; Ariel Amir
Journal:  Genetics       Date:  2022-04-04       Impact factor: 4.562

2.  Mutational robustness changes during long-term adaptation in laboratory budding yeast populations.

Authors:  Milo S Johnson; Michael M Desai
Journal:  Elife       Date:  2022-07-26       Impact factor: 8.713

3.  The population genetics of collateral resistance and sensitivity.

Authors:  Sarah M Ardell; Sergey Kryazhimskiy
Journal:  Elife       Date:  2021-12-10       Impact factor: 8.140

4.  Ploidy and recombination proficiency shape the evolutionary adaptation to constitutive DNA replication stress.

Authors:  Marco Fumasoni; Andrew W Murray
Journal:  PLoS Genet       Date:  2021-11-09       Impact factor: 5.917

5.  Toward a theory of evolution as multilevel learning.

Authors:  Vitaly Vanchurin; Yuri I Wolf; Mikhail I Katsnelson; Eugene V Koonin
Journal:  Proc Natl Acad Sci U S A       Date:  2022-02-08       Impact factor: 11.205

6.  Seed banks alter the molecular evolutionary dynamics of Bacillus subtilis.

Authors:  William R Shoemaker; Evgeniya Polezhaeva; Kenzie B Givens; Jay T Lennon
Journal:  Genetics       Date:  2022-05-31       Impact factor: 4.402

7.  Selection in a growing colony biases results of mutation accumulation experiments.

Authors:  Anjali Mahilkar; Namratha Raj; Sharvari Kemkar; Supreet Saini
Journal:  Sci Rep       Date:  2022-09-14       Impact factor: 4.996

8.  Higher-order epistasis and phenotypic prediction.

Authors:  Juannan Zhou; Mandy S Wong; Wei-Chia Chen; Adrian R Krainer; Justin B Kinney; David M McCandlish
Journal:  Proc Natl Acad Sci U S A       Date:  2022-09-21       Impact factor: 12.779

  8 in total

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