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Literature DB >> 33766898

Draft Genome Sequences of Dysgonomonas sp. Strains GY75 and GY617, Isolated from the Hindgut of Reticulitermes flavipes.

Abstract

Dysgonomonas species are facultative heterotrophs capable of growth on lignocellulose-derived polysaccharides. Dysgonomonas species harbor myriad genes involved in glycan modification and are well suited to the lignocellulose-rich conditions within the termite hindgut. Here, we report draft genome sequences for Dysgonomonas sp. strains GY75 and GY617, isolated from the hindgut of Reticulitermes flavipes.

Entities: Chemical Disease Species

Year: 2021 PMID： 33766898 PMCID： PMC7996457 DOI： 10.1128/MRA.00079-21

Source DB: PubMed Journal: Microbiol Resour Announc ISSN： 2576-098X

15 in total

1. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.

Authors: Anton Bankevich; Sergey Nurk; Dmitry Antipov; Alexey A Gurevich; Mikhail Dvorkin; Alexander S Kulikov; Valery M Lesin; Sergey I Nikolenko; Son Pham; Andrey D Prjibelski; Alexey V Pyshkin; Alexander V Sirotkin; Nikolay Vyahhi; Glenn Tesler; Max A Alekseyev; Pavel A Pevzner
Journal: J Comput Biol Date: 2012-04-16 Impact factor: 1.479

Draft Genome Sequences of Dysgonomonas sp. Strains GY75 and GY617, Isolated from the Hindgut of Reticulitermes flavipes.

1. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.

2. QUAST: quality assessment tool for genome assemblies.

3. Development and application of aerobic, chemically defined media for Dysgonomonas.

4. The Sequence Alignment/Map format and SAMtools.

5. Extracting DNA from the gut microbes of the termite (Zootermopsis nevadensis).

6. CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.

7. Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.

8. TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy.

9. NCBI prokaryotic genome annotation pipeline.

10. MAC: Merging Assemblies by Using Adjacency Algebraic Model and Classification.