Literature DB >> 33766521

Cohesin: behind dynamic genome topology and gene expression reprogramming.

Carlos Perea-Resa1, Lauren Wattendorf2, Sammer Marzouk2, Michael D Blower3.   

Abstract

Beyond its originally discovered role tethering replicated sister chromatids, cohesin has emerged as a master regulator of gene expression. Recent advances in chromatin topology resolution and single-cell studies have revealed that cohesin has a pivotal role regulating highly dynamic chromatin interactions linked to transcription control. The dynamic association of cohesin with chromatin and its capacity to perform loop extrusion contribute to the heterogeneity of chromatin contacts. Additionally, different cohesin subcomplexes, with specific properties and regulation, control gene expression across the cell cycle and during developmental cell commitment. Here, we discuss the most recent literature in the field to highlight the role of cohesin in gene expression regulation during transcriptional shifts and its relationship with human diseases.
Copyright © 2021 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  CdLS; DNA loops; cell cycle; cell identity; cohesin; transcription

Mesh:

Substances:

Year:  2021        PMID: 33766521      PMCID: PMC8364472          DOI: 10.1016/j.tcb.2021.03.005

Source DB:  PubMed          Journal:  Trends Cell Biol        ISSN: 0962-8924            Impact factor:   21.167


  96 in total

1.  DNA loop extrusion by human cohesin.

Authors:  Iain F Davidson; Benedikt Bauer; Daniela Goetz; Wen Tang; Gordana Wutz; Jan-Michael Peters
Journal:  Science       Date:  2019-11-21       Impact factor: 47.728

Review 2.  Organization of Chromosomal DNA by SMC Complexes.

Authors:  Stanislau Yatskevich; James Rhodes; Kim Nasmyth
Journal:  Annu Rev Genet       Date:  2019-10-02       Impact factor: 16.830

3.  Broadening of cohesinopathies: exome sequencing identifies mutations in ANKRD11 in two patients with Cornelia de Lange-overlapping phenotype.

Authors:  I Parenti; C Gervasini; J Pozojevic; L Graul-Neumann; J Azzollini; D Braunholz; E Watrin; K S Wendt; A Cereda; D Cittaro; G Gillessen-Kaesbach; D Lazarevic; M Mariani; S Russo; R Werner; P Krawitz; L Larizza; A Selicorni; F J Kaiser
Journal:  Clin Genet       Date:  2015-02-25       Impact factor: 4.438

4.  Comprehensive mapping of long-range interactions reveals folding principles of the human genome.

Authors:  Erez Lieberman-Aiden; Nynke L van Berkum; Louise Williams; Maxim Imakaev; Tobias Ragoczy; Agnes Telling; Ido Amit; Bryan R Lajoie; Peter J Sabo; Michael O Dorschner; Richard Sandstrom; Bradley Bernstein; M A Bender; Mark Groudine; Andreas Gnirke; John Stamatoyannopoulos; Leonid A Mirny; Eric S Lander; Job Dekker
Journal:  Science       Date:  2009-10-09       Impact factor: 47.728

5.  Live-cell imaging reveals enhancer-dependent Sox2 transcription in the absence of enhancer proximity.

Authors:  Jeffrey M Alexander; Juan Guan; Bingkun Li; Lenka Maliskova; Michael Song; Yin Shen; Bo Huang; Stavros Lomvardas; Orion D Weiner
Journal:  Elife       Date:  2019-05-24       Impact factor: 8.140

6.  Cohesin occupancy and composition at enhancers and promoters are linked to DNA replication origin proximity in Drosophila.

Authors:  Michelle Pherson; Ziva Misulovin; Maria Gause; Dale Dorsett
Journal:  Genome Res       Date:  2019-02-22       Impact factor: 9.043

7.  Visualizing DNA folding and RNA in embryos at single-cell resolution.

Authors:  Leslie J Mateo; Sedona E Murphy; Antonina Hafner; Isaac S Cinquini; Carly A Walker; Alistair N Boettiger
Journal:  Nature       Date:  2019-03-18       Impact factor: 49.962

8.  Chromatin structure dynamics during the mitosis-to-G1 phase transition.

Authors:  Haoyue Zhang; Daniel J Emerson; Thomas G Gilgenast; Katelyn R Titus; Yemin Lan; Peng Huang; Di Zhang; Hongxin Wang; Cheryl A Keller; Belinda Giardine; Ross C Hardison; Jennifer E Phillips-Cremins; Gerd A Blobel
Journal:  Nature       Date:  2019-11-27       Impact factor: 49.962

9.  Transcriptional dysregulation in NIPBL and cohesin mutant human cells.

Authors:  Jinglan Liu; Zhe Zhang; Masashige Bando; Takehiko Itoh; Matthew A Deardorff; Dinah Clark; Maninder Kaur; Stephany Tandy; Tatsuro Kondoh; Eric Rappaport; Nancy B Spinner; Hugo Vega; Laird G Jackson; Katsuhiko Shirahige; Ian D Krantz
Journal:  PLoS Biol       Date:  2009-05-26       Impact factor: 8.029

10.  BRD4 interacts with NIPBL and BRD4 is mutated in a Cornelia de Lange-like syndrome.

Authors:  Gabrielle Olley; Morad Ansari; Hemant Bengani; Graeme R Grimes; James Rhodes; Alex von Kriegsheim; Ana Blatnik; Fiona J Stewart; Emma Wakeling; Nicola Carroll; Alison Ross; Soo-Mi Park; Wendy A Bickmore; Madapura M Pradeepa; David R FitzPatrick
Journal:  Nat Genet       Date:  2018-01-29       Impact factor: 38.330

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  5 in total

Review 1.  An emerging role of transcription in chromosome segregation: Ongoing centromeric transcription maintains centromeric cohesion.

Authors:  Yujue Chen; Qian Zhang; Hong Liu
Journal:  Bioessays       Date:  2021-11-10       Impact factor: 4.345

Review 2.  New insights into genome folding by loop extrusion from inducible degron technologies.

Authors:  Elzo de Wit; Elphège P Nora
Journal:  Nat Rev Genet       Date:  2022-09-30       Impact factor: 59.581

3.  A stem cell marker KLF5 regulates CCAT1 via three-dimensional genome structure in colorectal cancer cells.

Authors:  Takashi Takeda; Yuhki Yokoyama; Hidekazu Takahashi; Daisuke Okuzaki; Kaho Asai; Hiroaki Itakura; Norikatsu Miyoshi; Shogo Kobayashi; Mamoru Uemura; Toshitsugu Fujita; Hiroo Ueno; Masaki Mori; Yuichiro Doki; Hodaka Fujii; Hidetoshi Eguchi; Hirofumi Yamamoto
Journal:  Br J Cancer       Date:  2021-10-27       Impact factor: 7.640

Review 4.  The Interplay of Cohesin and RNA Processing Factors: The Impact of Their Alterations on Genome Stability.

Authors:  Michaela Osadska; Tomas Selicky; Miroslava Kretova; Jan Jurcik; Barbara Sivakova; Ingrid Cipakova; Lubos Cipak
Journal:  Int J Mol Sci       Date:  2022-04-01       Impact factor: 5.923

5.  G1-Cyclin2 (Cln2) promotes chromosome hypercondensation in eco1/ctf7 rad61 null cells during hyperthermic stress in Saccharomyces cerevisiae.

Authors:  Sean Buskirk; Robert V Skibbens
Journal:  G3 (Bethesda)       Date:  2022-07-29       Impact factor: 3.542

  5 in total

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