Literature DB >> 33765276

Measuring Organ-Specific Translation Elongation Rate in Mice.

Maxim V Gerashchenko1, Vadim N Gladyshev2.   

Abstract

Modern methods of genome editing enable the rapid generation of mouse models to study the regulation of protein synthesis. At the same time, few options are available to study translation in rodents as the animal's complexity severely limits the repertoire of experimental tools. Here we describe a method to monitor translation in mice and other small animals. The technique is based on a ribosome profiling and specifically tailored toward measuring translation elongation. However, it can be easily applied for short upstream reading frames discovery. The advantage of this method is the ability to study translation in fully developed animals without extracting and subculturing cells, therefore, maintaining unperturbed physiological conditions.

Entities:  

Keywords:  Elongation; Harringtonine; Injection; Mouse; Organ; Ribosome profiling; Translation

Mesh:

Substances:

Year:  2021        PMID: 33765276      PMCID: PMC9125505          DOI: 10.1007/978-1-0716-1150-0_8

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  7 in total

1.  Transcriptome-wide measurement of translation by ribosome profiling.

Authors:  Nicholas J McGlincy; Nicholas T Ingolia
Journal:  Methods       Date:  2017-06-01       Impact factor: 3.608

Review 2.  Diamond Blackfan anemia treatment: past, present, and future.

Authors:  Anupama Narla; Adrianna Vlachos; David G Nathan
Journal:  Semin Hematol       Date:  2011-04       Impact factor: 3.851

3.  Inhibition of translation in eukaryotic systems by harringtonine.

Authors:  M Fresno; A Jiménez; D Vázquez
Journal:  Eur J Biochem       Date:  1977-01

4.  Global mapping of translation initiation sites in mammalian cells at single-nucleotide resolution.

Authors:  Sooncheol Lee; Botao Liu; Soohyun Lee; Sheng-Xiong Huang; Ben Shen; Shu-Bing Qian
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-27       Impact factor: 11.205

5.  Slowing ribosome velocity restores folding and function of mutant CFTR.

Authors:  Kathryn E Oliver; Robert Rauscher; Marjolein Mijnders; Wei Wang; Matthew J Wolpert; Jessica Maya; Carleen M Sabusap; Robert A Kesterson; Kevin L Kirk; Andras Rab; Ineke Braakman; Jeong S Hong; John L Hartman; Zoya Ignatova; Eric J Sorscher
Journal:  J Clin Invest       Date:  2019-12-02       Impact factor: 14.808

6.  Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes.

Authors:  Nicholas T Ingolia; Liana F Lareau; Jonathan S Weissman
Journal:  Cell       Date:  2011-11-03       Impact factor: 41.582

7.  Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling.

Authors:  Nicholas T Ingolia; Sina Ghaemmaghami; John R S Newman; Jonathan S Weissman
Journal:  Science       Date:  2009-02-12       Impact factor: 47.728

  7 in total
  1 in total

1.  Loss of SNORA73 reprograms cellular metabolism and protects against steatohepatitis.

Authors:  Arthur C Sletten; Jessica W Davidson; Busra Yagabasan; Samantha Moores; Michaela Schwaiger-Haber; Hideji Fujiwara; Sarah Gale; Xuntian Jiang; Rohini Sidhu; Susan J Gelman; Shuang Zhao; Gary J Patti; Daniel S Ory; Jean E Schaffer
Journal:  Nat Commun       Date:  2021-09-01       Impact factor: 17.694

  1 in total

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