Literature DB >> 33763205

VIRdb 2.0: Interactive analysis of comorbidity conditions associated with vitiligo pathogenesis using co-expression network-based approach.

Priyansh Srivastava1, Mehak Talwar1, Aishwarya Yadav1, Alakto Choudhary1, Sabyasachi Mohanty1, Samuel Bharti1, Priyanka Narad1, Abhishek Sengupta1.   

Abstract

Vitiligo is a disease of mysterious origins in the context of its occurrence and pathogenesis. The autoinflammatory theory is perhaps the most widely accepted theory that discusses the occurrence of Vitiligo. The theory elaborates the clinical association of vitiligo with autoimmune disorders such as Psoriasis, Multiple Sclerosis and Rheumatoid Arthritis and Diabetes. In the present work, we discuss the comprehensive set of differentially co-expressed genes involved in the crosstalk events between Vitiligo and associated autoimmune disorders (Psoriasis, Multiple Sclerosis and Rheumatoid Arthritis). We progress our previous tool, Vitiligo Information Resource (VIRdb), and incorporate into it a compendium of Vitiligo-related multi-omics datasets and present it as VIRdb 2.0. It is available as a web-resource consisting of statistically sound and manually curated information. VIRdb 2.0 is an integrative database as its datasets are connected to KEGG, STRING, GeneCards, SwissProt, NPASS. Through the present study, we communicate the major updates and expansions in the VIRdb and deliver the new version as VIRdb 2.0. VIRdb 2.0 offers the maximum user interactivity along with ease of navigation. We envision that VIRdb 2.0 will be pertinent for the researchers and clinicians engaged in drug development for vitiligo. Copyright:
© 2021 Srivastava P et al.

Entities:  

Keywords:  Comorbidity Network; Database; Differential Genes; Vitiligo; co-expressed Genes

Mesh:

Year:  2020        PMID: 33763205      PMCID: PMC7953917          DOI: 10.12688/f1000research.25713.2

Source DB:  PubMed          Journal:  F1000Res        ISSN: 2046-1402


  33 in total

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Authors:  Christian von Mering; Martijn Huynen; Daniel Jaeggi; Steffen Schmidt; Peer Bork; Berend Snel
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

2.  The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.

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Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

Review 3.  Gene expression omnibus: microarray data storage, submission, retrieval, and analysis.

Authors:  Tanya Barrett; Ron Edgar
Journal:  Methods Enzymol       Date:  2006       Impact factor: 1.600

4.  GEOquery: a bridge between the Gene Expression Omnibus (GEO) and BioConductor.

Authors:  Sean Davis; Paul S Meltzer
Journal:  Bioinformatics       Date:  2007-05-12       Impact factor: 6.937

Review 5.  Vitiligo and other diseases: coexistence or true association? Hamburg study on 321 patients.

Authors:  K U Schallreuter; R Lemke; O Brandt; R Schwartz; M Westhofen; R Montz; J Berger
Journal:  Dermatology       Date:  1994       Impact factor: 5.366

6.  GeneCards Version 3: the human gene integrator.

Authors:  Marilyn Safran; Irina Dalah; Justin Alexander; Naomi Rosen; Tsippi Iny Stein; Michael Shmoish; Noam Nativ; Iris Bahir; Tirza Doniger; Hagit Krug; Alexandra Sirota-Madi; Tsviya Olender; Yaron Golan; Gil Stelzer; Arye Harel; Doron Lancet
Journal:  Database (Oxford)       Date:  2010-08-05       Impact factor: 3.451

7.  Dysregulated autophagy increased melanocyte sensitivity to H2O2-induced oxidative stress in vitiligo.

Authors:  Yuanmin He; Shuli Li; Weigang Zhang; Wei Dai; Tingting Cui; Gang Wang; Tianwen Gao; Chunying Li
Journal:  Sci Rep       Date:  2017-02-10       Impact factor: 4.379

8.  Gene co-expression analysis for functional classification and gene-disease predictions.

Authors:  Sipko van Dam; Urmo Võsa; Adriaan van der Graaf; Lude Franke; João Pedro de Magalhães
Journal:  Brief Bioinform       Date:  2018-07-20       Impact factor: 11.622

Review 9.  Huntington disease: a single-gene degenerative disorder of the striatum.

Authors:  Peggy C Nopoulos
Journal:  Dialogues Clin Neurosci       Date:  2016-03       Impact factor: 5.986

10.  NPASS: natural product activity and species source database for natural product research, discovery and tool development.

Authors:  Xian Zeng; Peng Zhang; Weidong He; Chu Qin; Shangying Chen; Lin Tao; Yali Wang; Ying Tan; Dan Gao; Bohua Wang; Zhe Chen; Weiping Chen; Yu Yang Jiang; Yu Zong Chen
Journal:  Nucleic Acids Res       Date:  2018-01-04       Impact factor: 16.971

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