Literature DB >> 33761966

Unraveling the cartography of the cancer ecosystem.

Roy Rabbie1,2, Doreen Lau3,4, Richard M White5, David J Adams6.   

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Year:  2021        PMID: 33761966      PMCID: PMC7988951          DOI: 10.1186/s13059-021-02310-5

Source DB:  PubMed          Journal:  Genome Biol        ISSN: 1474-7596            Impact factor:   13.583


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  31 in total

1.  Visualization and analysis of gene expression in tissue sections by spatial transcriptomics.

Authors:  Patrik L Ståhl; Fredrik Salmén; Sanja Vickovic; Anna Lundmark; José Fernández Navarro; Jens Magnusson; Stefania Giacomello; Michaela Asp; Jakub O Westholm; Mikael Huss; Annelie Mollbrink; Sten Linnarsson; Simone Codeluppi; Åke Borg; Fredrik Pontén; Paul Igor Costea; Pelin Sahlén; Jan Mulder; Olaf Bergmann; Joakim Lundeberg; Jonas Frisén
Journal:  Science       Date:  2016-07-01       Impact factor: 47.728

Review 2.  Single-Cell Analysis Using Droplet Microfluidics.

Authors:  Kinga Matuła; Francesca Rivello; Wilhelm T S Huck
Journal:  Adv Biosyst       Date:  2019-11-26

Review 3.  MALDI imaging mass spectrometry--painting molecular pictures.

Authors:  Kristina Schwamborn; Richard M Caprioli
Journal:  Mol Oncol       Date:  2010-09-25       Impact factor: 6.603

Review 4.  Intra-tumour heterogeneity: a looking glass for cancer?

Authors:  Andriy Marusyk; Vanessa Almendro; Kornelia Polyak
Journal:  Nat Rev Cancer       Date:  2012-04-19       Impact factor: 60.716

5.  Multiplex single cell profiling of chromatin accessibility by combinatorial cellular indexing.

Authors:  Darren A Cusanovich; Riza Daza; Andrew Adey; Hannah A Pliner; Lena Christiansen; Kevin L Gunderson; Frank J Steemers; Cole Trapnell; Jay Shendure
Journal:  Science       Date:  2015-05-07       Impact factor: 47.728

6.  Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position.

Authors:  Jason D Buenrostro; Paul G Giresi; Lisa C Zaba; Howard Y Chang; William J Greenleaf
Journal:  Nat Methods       Date:  2013-10-06       Impact factor: 28.547

Review 7.  Integrative single-cell analysis.

Authors:  Tim Stuart; Rahul Satija
Journal:  Nat Rev Genet       Date:  2019-05       Impact factor: 53.242

8.  Highly sensitive spatial transcriptomics at near-cellular resolution with Slide-seqV2.

Authors:  Robert R Stickels; Evan Murray; Evan Z Macosko; Fei Chen; Pawan Kumar; Jilong Li; Jamie L Marshall; Daniela J Di Bella; Paola Arlotta
Journal:  Nat Biotechnol       Date:  2020-12-07       Impact factor: 54.908

9.  Spatial modeling of prostate cancer metabolic gene expression reveals extensive heterogeneity and selective vulnerabilities.

Authors:  Yuliang Wang; Shuyi Ma; Walter L Ruzzo
Journal:  Sci Rep       Date:  2020-02-26       Impact factor: 4.379

10.  Identification and transfer of spatial transcriptomics signatures for cancer diagnosis.

Authors:  Niyaz Yoosuf; José Fernández Navarro; Fredrik Salmén; Patrik L Ståhl; Carsten O Daub
Journal:  Breast Cancer Res       Date:  2020-01-13       Impact factor: 6.466

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  2 in total

Review 1.  Artificial intelligence in histopathology: enhancing cancer research and clinical oncology.

Authors:  Artem Shmatko; Narmin Ghaffari Laleh; Moritz Gerstung; Jakob Nikolas Kather
Journal:  Nat Cancer       Date:  2022-09-22

Review 2.  Single-Cell Approaches to Deconvolute the Development of HSCs.

Authors:  Yang Xiang; Ryohichi Sugimura
Journal:  Cells       Date:  2021-10-25       Impact factor: 6.600

  2 in total

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