Literature DB >> 33758739

Identification of a novel glycerophosphodiester phosphodiesterase from Bacillus altitudinis W3 and its application in degradation of diphenyl phosphate.

Runxian Ren1, Lixin Zhai1, Qiaopeng Tian1, Di Meng1, Zhengbin Guan1, Yujie Cai1, Xiangru Liao1.   

Abstract

Diphenyl phosphate (DPHP) has been increasingly detected in environmental samples, posing a potential hazard to humans and other organisms and arousing concern regarding its adverse effects. Biological degradation of DPHP is considered a promising and environmentally friendly method for its removal. In this study, the bagdpd gene was mined from the Bacillus altitudinis W3 genome and identified as a glycerophosphodiester phosphodiesterase by bioinformatics analysis. The enzyme was expressed and its biochemical properties were studied. When using bis(4-nitrophenyl) phosphate as substrate, enzyme activity was optimal at 55 °C and a pH of 8.5. The enzyme remained stable in the pH range of 8.0 - 10.0. The rBaGDPD enzyme degraded DPHP and the reaction product was identified as phenyl phosphate by LC-MS. This is the first report of a glycerophosphodiester phosphodiesterase exhibiting hydrolytic activity against DPHP. This study demonstrated that rBaGDPD could have the potential for bioremediation and industrial applications. © King Abdulaziz City for Science and Technology 2021.

Entities:  

Keywords:  Bacillus altitudinis W3; Biochemical properties; DPHP; Degradation; Glycerophosphodiester phosphodiesterase

Year:  2021        PMID: 33758739      PMCID: PMC7937590          DOI: 10.1007/s13205-021-02704-z

Source DB:  PubMed          Journal:  3 Biotech        ISSN: 2190-5738            Impact factor:   2.406


  26 in total

Review 1.  The CATH protein family database: a resource for structural and functional annotation of genomes.

Authors:  Christine A Orengo; James E Bray; Daniel W A Buchan; Andrew Harrison; David Lee; Frances M G Pearl; Ian Sillitoe; Annabel E Todd; Janet M Thornton
Journal:  Proteomics       Date:  2002-01       Impact factor: 3.984

2.  Crystal structure of glycerophosphodiester phosphodiesterase (GDPD) from Thermoanaerobacter tengcongensis, a metal ion-dependent enzyme: insight into the catalytic mechanism.

Authors:  Liang Shi; Jun-Feng Liu; Xiao-Min An; Dong-Cai Liang
Journal:  Proteins       Date:  2008-07

3.  Mining of aminotransferase gene ota3 from Bacillus pumilus W3 via genome analysis, gene cloning and expressing for compound bioamination.

Authors:  Lixin Zhai; Shaolan Yang; Yingjie Lai; Di Meng; Qiaopeng Tian; Zhengbing Guan; Yujie Cai; Xiangru Liao
Journal:  Gene       Date:  2018-11-05       Impact factor: 3.688

4.  A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding.

Authors:  M M Bradford
Journal:  Anal Biochem       Date:  1976-05-07       Impact factor: 3.365

5.  Complete genome sequence of Bacillus pumilus W3: A strain exhibiting high laccase activity.

Authors:  Zheng-Bing Guan; Yu-Jie Cai; Yan-Zhou Zhang; Hong Zhao; Xiang-Ru Liao
Journal:  J Biotechnol       Date:  2015-05-07       Impact factor: 3.307

6.  Cleavage of structural proteins during the assembly of the head of bacteriophage T4.

Authors:  U K Laemmli
Journal:  Nature       Date:  1970-08-15       Impact factor: 49.962

7.  CDD: NCBI's conserved domain database.

Authors:  Aron Marchler-Bauer; Myra K Derbyshire; Noreen R Gonzales; Shennan Lu; Farideh Chitsaz; Lewis Y Geer; Renata C Geer; Jane He; Marc Gwadz; David I Hurwitz; Christopher J Lanczycki; Fu Lu; Gabriele H Marchler; James S Song; Narmada Thanki; Zhouxi Wang; Roxanne A Yamashita; Dachuan Zhang; Chanjuan Zheng; Stephen H Bryant
Journal:  Nucleic Acids Res       Date:  2014-11-20       Impact factor: 16.971

8.  Diphenyl Phosphate-Induced Toxicity During Embryonic Development.

Authors:  Constance A Mitchell; Aalekhya Reddam; Subham Dasgupta; Sharon Zhang; Heather M Stapleton; David C Volz
Journal:  Environ Sci Technol       Date:  2019-03-20       Impact factor: 9.028

9.  The developmentally regulated osteoblast phosphodiesterase GDE3 is glycerophosphoinositol-specific and modulates cell growth.

Authors:  Daniela Corda; Takahiro Kudo; Pasquale Zizza; Cristiano Iurisci; Eri Kawai; Norihisa Kato; Noriyuki Yanaka; Stefania Mariggiò
Journal:  J Biol Chem       Date:  2009-07-13       Impact factor: 5.157

10.  Characterization of a glycerophosphodiesterase with an unusual tripartite distribution and an important role in the asexual blood stages of Plasmodium falciparum.

Authors:  Titilola Denloye; Seema Dalal; Michael Klemba
Journal:  Mol Biochem Parasitol       Date:  2012-09-20       Impact factor: 1.759

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