Literature DB >> 33758234

The phylogeographic history of Krascheninnikovia reflects the development of dry steppes and semi-deserts in Eurasia.

Anna Seidl1, Karin Tremetsberger2, Simon Pfanzelt3, Frank R Blattner3, Barbara Neuffer4, Nikolai Friesen5,6, Herbert Hurka4, Alexander Shmakov7, Oyuntsetseg Batlai8, Anže Žerdoner Čalasan4, Polina V Vesselova9, Karl-Georg Bernhardt2.   

Abstract

Constituting one of Earth's major biomes, steppes are characterised by naturally treeless extra-tropical vegetation. The formation of the Eurasian steppe belt, the largest steppe region in the world, began in Central Asia during the Neogene. In the glacial stages of the Pleistocene, steppe displaced forest vegetation, which in turn recolonised the area during the warmer interglacial periods, thus affecting the distribution of plants adapted to these habitats. Krascheninnikovia ceratoides (Chenopodiaceae) is a plant characteristic of dry steppe and semi-desert formations. Earlier studies showed that the ancestor of this autochthonous steppe element originated in Central Asia during the Miocene/Pliocene, i.e., in the same region and at the same time as the first appearance of steppe vegetation. However, as the extant lineages of Krascheninnikovia ceratoides diversified only 2.2 ± 0.9 Mya, it may represent a modern element of current dry steppe and semi-desert formations, rather than a component of the first steppe precursors of the Miocene. As such, it may have capitalised on the climatic conditions of the cold stages of the Quaternary to expand its range and colonise suitable habitats outside of its area of origin. To test this hypothesis, phylogeographic methods were applied to high-resolution genotyping-by-sequencing data. Our results indicate that Krascheninnikovia originated in western Central Asia and the Russian Altai, then spread to Europe in the West, and reached North America in the East. The populations of eastern Central Asia and North America belong to the same clade and are genetically clearly distinct from the Euro-Siberian populations. Among the populations west of the Altai Mountains, the European populations are genetically distinct from all others, which could be the result of the separation of populations east and west of the Urals caused by the Pleistocene transgressions of the Caspian Sea.

Entities:  

Year:  2021        PMID: 33758234      PMCID: PMC7988158          DOI: 10.1038/s41598-021-85735-z

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.996


  29 in total

1.  A likelihood approach to estimating phylogeny from discrete morphological character data.

Authors:  P O Lewis
Journal:  Syst Biol       Date:  2001 Nov-Dec       Impact factor: 15.683

2.  Molecular signals for late Tertiary/early Quaternary range splits of an Eurasian steppe plant: Clausia aprica (Brassicaceae).

Authors:  A Franzke; H Hurka; D Janssen; B Neuffer; N Friesen; M Markov; K Mummenhoff
Journal:  Mol Ecol       Date:  2004-09       Impact factor: 6.185

3.  Phylogeny and biogeography of Allium (Amaryllidaceae: Allieae) based on nuclear ribosomal internal transcribed spacer and chloroplast rps16 sequences, focusing on the inclusion of species endemic to China.

Authors:  Qin-Qin Li; Song-Dong Zhou; Xing-Jin He; Yan Yu; Yu-Cheng Zhang; Xian-Qin Wei
Journal:  Ann Bot       Date:  2010-11       Impact factor: 4.357

4.  adegenet: a R package for the multivariate analysis of genetic markers.

Authors:  Thibaut Jombart
Journal:  Bioinformatics       Date:  2008-04-08       Impact factor: 6.937

5.  A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data.

Authors:  Heng Li
Journal:  Bioinformatics       Date:  2011-09-08       Impact factor: 6.937

Review 6.  Global grass (Poaceae) success underpinned by traits facilitating colonization, persistence and habitat transformation.

Authors:  H P Linder; Caroline E R Lehmann; Sally Archibald; Colin P Osborne; David M Richardson
Journal:  Biol Rev Camb Philos Soc       Date:  2017-12-12

7.  Stacks: an analysis tool set for population genomics.

Authors:  Julian Catchen; Paul A Hohenlohe; Susan Bassham; Angel Amores; William A Cresko
Journal:  Mol Ecol       Date:  2013-05-24       Impact factor: 6.185

8.  Pleistocene refugia and polytopic replacement of diploids by tetraploids in the Patagonian and Subantarctic plant Hypochaeris incana (Asteraceae, Cichorieae).

Authors:  Karin Tremetsberger; Estrella Urtubey; Anass Terrab; Carlos M Baeza; María Angeles Ortiz; María Talavera; Christiane König; Eva M Temsch; Gudrun Kohl; Salvador Talavera; Tod F Stuessy
Journal:  Mol Ecol       Date:  2009-08-07       Impact factor: 6.185

9.  IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era.

Authors:  Bui Quang Minh; Heiko A Schmidt; Olga Chernomor; Dominik Schrempf; Michael D Woodhams; Arndt von Haeseler; Robert Lanfear
Journal:  Mol Biol Evol       Date:  2020-05-01       Impact factor: 16.240

10.  nQuire: a statistical framework for ploidy estimation using next generation sequencing.

Authors:  Clemens L Weiß; Marina Pais; Liliana M Cano; Sophien Kamoun; Hernán A Burbano
Journal:  BMC Bioinformatics       Date:  2018-04-04       Impact factor: 3.169

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  2 in total

1.  Allium pallasii and A. caricifolium-Surprisingly Diverse Old Steppe Species, Showing a Clear Geographical Barrier in the Area of Lake Zaysan.

Authors:  Nikolai Friesen; Lisa Grützmacher; Mikhail Skaptsov; Polina Vesselova; Vladimir Dorofeyev; Alexander N Luferov; Nazgul Turdumatova; Georgii Lazkov; Sergei V Smirnov; Alexander I Shmakov; Herbert Hurka
Journal:  Plants (Basel)       Date:  2022-05-30

2.  Pleistocene dynamics of the Eurasian steppe as a driving force of evolution: Phylogenetic history of the genus Capsella (Brassicaceae).

Authors:  Anže Žerdoner Čalasan; Herbert Hurka; Dmitry A German; Simon Pfanzelt; Frank R Blattner; Anna Seidl; Barbara Neuffer
Journal:  Ecol Evol       Date:  2021-08-18       Impact factor: 3.167

  2 in total

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