Literature DB >> 33756110

The antigenic anatomy of SARS-CoV-2 receptor binding domain.

Wanwisa Dejnirattisai1, Daming Zhou2, Helen M Ginn3, Helen M E Duyvesteyn2, Piyada Supasa1, James Brett Case4, Yuguang Zhao2, Thomas S Walter2, Alexander J Mentzer5, Chang Liu6, Beibei Wang1, Guido C Paesen2, Jose Slon-Campos1, César López-Camacho1, Natasha M Kafai7, Adam L Bailey8, Rita E Chen7, Baoling Ying4, Craig Thompson9, Jai Bolton10, Alex Fyfe9, Sunetra Gupta9, Tiong Kit Tan11, Javier Gilbert-Jaramillo12, William James12, Michael Knight12, Miles W Carroll13, Donal Skelly14, Christina Dold15, Yanchun Peng11, Robert Levin16, Tao Dong17, Andrew J Pollard18, Julian C Knight5, Paul Klenerman19, Nigel Temperton20, David R Hall3, Mark A Williams3, Neil G Paterson3, Felicity K R Bertram3, C Alistair Siebert3, Daniel K Clare3, Andrew Howe3, Julika Radecke3, Yun Song3, Alain R Townsend21, Kuan-Ying A Huang22, Elizabeth E Fry2, Juthathip Mongkolsapaya23, Michael S Diamond24, Jingshan Ren25, David I Stuart26, Gavin R Screaton27.   

Abstract

Antibodies are crucial to immune protection against SARS-CoV-2, with some in emergency use as therapeutics. Here, we identify 377 human monoclonal antibodies (mAbs) recognizing the virus spike and focus mainly on 80 that bind the receptor binding domain (RBD). We devise a competition data-driven method to map RBD binding sites. We find that although antibody binding sites are widely dispersed, neutralizing antibody binding is focused, with nearly all highly inhibitory mAbs (IC50 < 0.1 μg/mL) blocking receptor interaction, except for one that binds a unique epitope in the N-terminal domain. Many of these neutralizing mAbs use public V-genes and are close to germline. We dissect the structural basis of recognition for this large panel of antibodies through X-ray crystallography and cryoelectron microscopy of 19 Fab-antigen structures. We find novel binding modes for some potently inhibitory antibodies and demonstrate that strongly neutralizing mAbs protect, prophylactically or therapeutically, in animal models.
Copyright © 2021 The Authors. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  coronavirus, SARS-CoV-2, anti-RBD antibody, receptor binding domain, antibody, immune responses, virus structure

Mesh:

Substances:

Year:  2021        PMID: 33756110      PMCID: PMC7891125          DOI: 10.1016/j.cell.2021.02.032

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  114 in total

1.  Bispecific antibodies targeting distinct regions of the spike protein potently neutralize SARS-CoV-2 variants of concern.

Authors:  Hyeseon Cho; Kristina Kay Gonzales-Wartz; Deli Huang; Meng Yuan; Mary Peterson; Janie Liang; Nathan Beutler; Jonathan L Torres; Yu Cong; Elena Postnikova; Sandhya Bangaru; Chloe Adrienna Talana; Wei Shi; Eun Sung Yang; Yi Zhang; Kwanyee Leung; Lingshu Wang; Linghang Peng; Jeff Skinner; Shanping Li; Nicholas C Wu; Hejun Liu; Cherrelle Dacon; Thomas Moyer; Melanie Cohen; Ming Zhao; Frances Eun-Hyung Lee; Rona S Weinberg; Iyadh Douagi; Robin Gross; Connie Schmaljohn; Amarendra Pegu; John R Mascola; Michael Holbrook; David Nemazee; Thomas F Rogers; Andrew B Ward; Ian A Wilson; Peter D Crompton; Joshua Tan
Journal:  Sci Transl Med       Date:  2021-10-20       Impact factor: 19.319

2.  Potent human broadly SARS-CoV-2-neutralizing IgA and IgG antibodies effective against Omicron BA.1 and BA.2.

Authors:  Timothée Bruel; Guilherme Dias de Melo; Matthieu Prot; Etienne Simon-Lorière; Hervé Bourhy; Xavier Montagutelli; Félix A Rey; Olivier Schwartz; Cyril Planchais; Ignacio Fernández; Maxime Beretta; Pablo Guardado-Calvo; Jérémy Dufloo; Luis M Molinos-Albert; Marija Backovic; Jeanne Chiaravalli; Emilie Giraud; Benjamin Vesin; Laurine Conquet; Ludivine Grzelak; Delphine Planas; Isabelle Staropoli; Florence Guivel-Benhassine; Thierry Hieu; Mikaël Boullé; Minerva Cervantes-Gonzalez; Marie-Noëlle Ungeheuer; Pierre Charneau; Sylvie van der Werf; Fabrice Agou; Jordan D Dimitrov; Hugo Mouquet
Journal:  J Exp Med       Date:  2022-06-15       Impact factor: 17.579

3.  Highly synergistic combinations of nanobodies that target SARS-CoV-2 and are resistant to escape.

Authors:  Fred D Mast; Peter C Fridy; Natalia E Ketaren; Junjie Wang; Erica Y Jacobs; Jean Paul Olivier; Tanmoy Sanyal; Kelly R Molloy; Fabian Schmidt; Magdalena Rutkowska; Yiska Weisblum; Lucille M Rich; Elizabeth R Vanderwall; Nicholas Dambrauskas; Vladimir Vigdorovich; Sarah Keegan; Jacob B Jiler; Milana E Stein; Paul Dominic B Olinares; Louis Herlands; Theodora Hatziioannou; D Noah Sather; Jason S Debley; David Fenyö; Andrej Sali; Paul D Bieniasz; John D Aitchison; Brian T Chait; Michael P Rout
Journal:  Elife       Date:  2021-12-07       Impact factor: 8.140

4.  A Single Amino Acid at Residue 188 of the Hexon Protein Is Responsible for the Pathogenicity of the Emerging Novel Virus Fowl Adenovirus 4.

Authors:  Yu Zhang; Aijing Liu; Yanan Wang; Hongyu Cui; Yulong Gao; Xiaole Qi; Changjun Liu; Yanping Zhang; Kai Li; Li Gao; Qing Pan; Xiaomei Wang
Journal:  J Virol       Date:  2021-08-10       Impact factor: 5.103

5.  Analysis of the molecular mechanism of SARS-CoV-2 antibodies.

Authors:  Dongfu Jin; Jing Wei; Jian Sun
Journal:  Biochem Biophys Res Commun       Date:  2021-06-05       Impact factor: 3.575

6.  Mapping mutations to the SARS-CoV-2 RBD that escape binding by different classes of antibodies.

Authors:  Allison J Greaney; Tyler N Starr; Christopher O Barnes; Yiska Weisblum; Fabian Schmidt; Marina Caskey; Christian Gaebler; Alice Cho; Marianna Agudelo; Shlomo Finkin; Zijun Wang; Daniel Poston; Frauke Muecksch; Theodora Hatziioannou; Paul D Bieniasz; Davide F Robbiani; Michel C Nussenzweig; Pamela J Bjorkman; Jesse D Bloom
Journal:  Nat Commun       Date:  2021-07-07       Impact factor: 14.919

Review 7.  The success of SARS-CoV-2 vaccines and challenges ahead.

Authors:  Kanta Subbarao
Journal:  Cell Host Microbe       Date:  2021-07-14       Impact factor: 21.023

8.  A non-RBM targeted RBD specific antibody neutralizes SARS-CoV-2 inducing S1 shedding.

Authors:  Yingyi Long; Shuyi Song; Feiyang Luo; Xiaojian Han; Chao Hu; Yingming Wang; Shenglong Li; Wang Wang; Huajun Zhang; Bo Zhang; Tingting Li; Aishun Jin
Journal:  Biochem Biophys Res Commun       Date:  2021-07-20       Impact factor: 3.575

9.  Identification of Human SARS-CoV-2 Monoclonal Antibodies from Convalescent Patients Using EBV Immortalization.

Authors:  Rut Valgardsdottir; Irene Cattaneo; Gavino Napolitano; Annibale Raglio; Orietta Spinelli; Silvia Salmoiraghi; Concetta Castilletti; Daniele Lapa; Maria Rosaria Capobianchi; Claudio Farina; Josee Golay
Journal:  Antibodies (Basel)       Date:  2021-07-05

Review 10.  Antibody and B cell responses to SARS-CoV-2 infection and vaccination.

Authors:  Katharina Röltgen; Scott D Boyd
Journal:  Cell Host Microbe       Date:  2021-06-17       Impact factor: 21.023

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