Literature DB >> 33755914

Backbone chemical shift spectral assignments of SARS coronavirus-2 non-structural protein nsp9.

Erika F Dudás1, Rita Puglisi1, Sophie Marianne Korn2,3, Caterina Alfano4, Maria Laura Bellone5, Fabrizio Dal Piaz5, Geoff Kelly6, Elisa Monaca4, Andreas Schlundt2,3, Harald Schwalbe2,3, Annalisa Pastore7.   

Abstract

As part of an International consortium aiming at the characterization by NMR of the proteins of the SARS-CoV-2 virus, we have obtained the virtually complete assignment of the backbone atoms of the non-structural protein nsp9. This small (12 kDa) protein is encoded by ORF1a, binds to RNA and seems to be essential for viral RNA synthesis. The crystal structures of the SARS-CoV-2 protein and other homologues suggest that the protein is dimeric as also confirmed by analytical ultracentrifugation and dynamic light scattering. Our data constitute the prerequisite for further NMR-based characterization, and provide the starting point for the identification of small molecule lead compounds that could interfere with RNA binding and prevent viral replication.
© 2021. The Author(s).

Entities:  

Keywords:  Coronavirus; Covid-19 NMR; Protein; SARS-CoV-2; Solution NMR; Structure

Mesh:

Substances:

Year:  2021        PMID: 33755914      PMCID: PMC7985572          DOI: 10.1007/s12104-021-10011-0

Source DB:  PubMed          Journal:  Biomol NMR Assign        ISSN: 1874-270X            Impact factor:   0.746


  3 in total

1.  NMR-Based Analysis of Nanobodies to SARS-CoV-2 Nsp9 Reveals a Possible Antiviral Strategy Against COVID-19.

Authors:  Gennaro Esposito; Yamanappa Hunashal; Mathias Percipalle; Tomas Venit; Mame Massar Dieng; Federico Fogolari; Gholamreza Hassanzadeh; Fabio Piano; Kristin C Gunsalus; Youssef Idaghdour; Piergiorgio Percipalle
Journal:  Adv Biol (Weinh)       Date:  2021-10-27

2.  Large-Scale Recombinant Production of the SARS-CoV-2 Proteome for High-Throughput and Structural Biology Applications.

Authors:  Nadide Altincekic; Sophie Marianne Korn; Nusrat Shahin Qureshi; Marie Dujardin; Martí Ninot-Pedrosa; Rupert Abele; Marie Jose Abi Saad; Caterina Alfano; Fabio C L Almeida; Islam Alshamleh; Gisele Cardoso de Amorim; Thomas K Anderson; Cristiane D Anobom; Chelsea Anorma; Jasleen Kaur Bains; Adriaan Bax; Martin Blackledge; Julius Blechar; Anja Böckmann; Louis Brigandat; Anna Bula; Matthias Bütikofer; Aldo R Camacho-Zarco; Teresa Carlomagno; Icaro Putinhon Caruso; Betül Ceylan; Apirat Chaikuad; Feixia Chu; Laura Cole; Marquise G Crosby; Vanessa de Jesus; Karthikeyan Dhamotharan; Isabella C Felli; Jan Ferner; Yanick Fleischmann; Marie-Laure Fogeron; Nikolaos K Fourkiotis; Christin Fuks; Boris Fürtig; Angelo Gallo; Santosh L Gande; Juan Atilio Gerez; Dhiman Ghosh; Francisco Gomes-Neto; Oksana Gorbatyuk; Serafima Guseva; Carolin Hacker; Sabine Häfner; Bing Hao; Bruno Hargittay; K Henzler-Wildman; Jeffrey C Hoch; Katharina F Hohmann; Marie T Hutchison; Kristaps Jaudzems; Katarina Jović; Janina Kaderli; Gints Kalniņš; Iveta Kaņepe; Robert N Kirchdoerfer; John Kirkpatrick; Stefan Knapp; Robin Krishnathas; Felicitas Kutz; Susanne Zur Lage; Roderick Lambertz; Andras Lang; Douglas Laurents; Lauriane Lecoq; Verena Linhard; Frank Löhr; Anas Malki; Luiza Mamigonian Bessa; Rachel W Martin; Tobias Matzel; Damien Maurin; Seth W McNutt; Nathane Cunha Mebus-Antunes; Beat H Meier; Nathalie Meiser; Miguel Mompeán; Elisa Monaca; Roland Montserret; Laura Mariño Perez; Celine Moser; Claudia Muhle-Goll; Thais Cristtina Neves-Martins; Xiamonin Ni; Brenna Norton-Baker; Roberta Pierattelli; Letizia Pontoriero; Yulia Pustovalova; Oliver Ohlenschläger; Julien Orts; Andrea T Da Poian; Dennis J Pyper; Christian Richter; Roland Riek; Chad M Rienstra; Angus Robertson; Anderson S Pinheiro; Raffaele Sabbatella; Nicola Salvi; Krishna Saxena; Linda Schulte; Marco Schiavina; Harald Schwalbe; Mara Silber; Marcius da Silva Almeida; Marc A Sprague-Piercy; Georgios A Spyroulias; Sridhar Sreeramulu; Jan-Niklas Tants; Kaspars Tārs; Felix Torres; Sabrina Töws; Miguel Á Treviño; Sven Trucks; Aikaterini C Tsika; Krisztina Varga; Ying Wang; Marco E Weber; Julia E Weigand; Christoph Wiedemann; Julia Wirmer-Bartoschek; Maria Alexandra Wirtz Martin; Johannes Zehnder; Martin Hengesbach; Andreas Schlundt
Journal:  Front Mol Biosci       Date:  2021-05-10

3.  A distinct ssDNA/RNA binding interface in the Nsp9 protein from SARS-CoV-2.

Authors:  Serene El-Kamand; Mar-Dean Du Plessis; Natasha Breen; Lexie Johnson; Samuel Beard; Ann H Kwan; Derek J Richard; Liza Cubeddu; Roland Gamsjaeger
Journal:  Proteins       Date:  2021-08-13
  3 in total

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