Literature DB >> 33755851

Development of microsatellite markers for Calyptranthes clusiifolia (Myrtaceae).

Jaqueline Fidelis Duarte1,2, Sheila Valéria Alvares Carvalho3, Alison Gonçalves Nazareno4, Rubens Manoel Dos Santos5, Dulcineia de Carvalho6.   

Abstract

The endemic tree species Calyptranthes clusiifolia (Myrtaceae) plays a relevant ecological role in the forest fragments where it has a common occurrence. In this study, we reported the development of microsatellite markers for C. clusiifolia what will allow a better understanding of the relationship between the forest fragmentation process and the genetic structure and diversity of tree populations. Seven microsatellite markers were developed using an enriched genomic library and characterized in 30 individuals (from three populations). These seven loci were polymorphic and resulted in a total of 23 alleles. The expected heterozygosity (HE) varied from 0.14 (Caly 06) to 0.73 (Caly 22). Linkage disequilibrium between the loci (p > 0.0007) pairs was not detected. The parentage exclusion power of the first (Pe-1) and the second (Pe-2) parents were 0.6099 and 0.8548, respectively. The microsatellite markers developed are indicated for future studies of the genetic diversity in natural populations of C. clusiifolia.

Entities:  

Keywords:  Atlantic rainforest; Genetic diversity; Myrtaceae; SSR markers

Mesh:

Year:  2021        PMID: 33755851     DOI: 10.1007/s11033-021-06280-6

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.316


  7 in total

Review 1.  Microsatellites: simple sequences with complex evolution.

Authors:  Hans Ellegren
Journal:  Nat Rev Genet       Date:  2004-06       Impact factor: 53.242

2.  Microsatellites for ecologists: a practical guide to using and evaluating microsatellite markers.

Authors:  Kimberly A Selkoe; Robert J Toonen
Journal:  Ecol Lett       Date:  2006-05       Impact factor: 9.492

3.  The same but different: monomorphic microsatellite markers as a new tool for genetic analysis.

Authors:  Alison G Nazareno; Mauricio S dos Reis
Journal:  Am J Bot       Date:  2011-09-16       Impact factor: 3.844

4.  Expression of Concern to: Downregulation of NIN/RPN12 binding protein inhibit the growth of human hepatocellular carcinoma cells.

Authors:  Zaiming Lu; Qiyong Guo; Aizhong Shi; Feng Xie; Qingjie Lu
Journal:  Mol Biol Rep       Date:  2021-04-02       Impact factor: 2.316

5.  Patterns of relatedness and parentage in an asocial, polyandrous striped hyena population.

Authors:  Aaron P Wagner; Scott Creel; Laurence G Frank; Steven T Kalinowski
Journal:  Mol Ecol       Date:  2007-09-04       Impact factor: 6.185

6.  A molecular strategy to optimize bovine tuberculosis post-mortem diagnosis and the exposure to Mycobacterium tuberculosis variant bovis.

Authors:  Bruna Correa Lopes; Emily Marques Dos Reis; Fernanda Bastos Rubin de Bitencourt; Márcia Regina Loiko; André Vinícius Andrade Bezerra; Thais Silveira Bueno; Isadora Tadeval Lape; Cristine Cerva; Mário de Menezes Coppola; Rogério Oliveira Rodrigues; José Eduardo Vargas; Angélica Cavalheiro Bertagnolli; Fabiana Quoos Mayer
Journal:  Mol Biol Rep       Date:  2020-08-11       Impact factor: 2.316

7.  Primer3--new capabilities and interfaces.

Authors:  Andreas Untergasser; Ioana Cutcutache; Triinu Koressaar; Jian Ye; Brant C Faircloth; Maido Remm; Steven G Rozen
Journal:  Nucleic Acids Res       Date:  2012-06-22       Impact factor: 16.971

  7 in total

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