Literature DB >> 33751160

Prediction of tumor size in patients with invasive ductal carcinoma using FT-IR spectroscopy combined with chemometrics: a preliminary study.

Zhimin Zhu1, Chen Chen1, Cheng Chen2,3, Ziwei Yan1, Fangfang Chen1, Bo Yang1, Huiting Zhang1, Huijie Han4, Xiaoyi Lv5,6.   

Abstract

Precise detection of tumor size is essential for early diagnosis, treatment, and evaluation of the prognosis of breast cancer. However, there are some errors between the tumor size of breast cancer measured by conventional imaging methods and the pathological tumor size. Invasive ductal carcinoma (IDC) is a common pathological type of breast cancer. In this study, serum Fourier transform infrared spectroscopy (FT-IR) combined with chemometric methods was used to predict the maximum diameter and maximum vertical diameter of tumors in IDC patients. Three models were evaluated based on the pathological tumor size measured after surgery and included grid search support vector machine regression (GS-SVR), back propagation neural network optimized by genetic algorithm (GA-BP-ANN), and back propagation neural network optimized by particle swarm optimization (PSO-BP-ANN). The results show that three models can accurately predict tumor size. The GA-BP-ANN model provided the best fitting quality of the largest tumor diameter with the determination coefficients of 0.984 in test set. And the GS-SVR model provided the best fitting quality of the largest vertical tumor diameter with the determination coefficients of 0.982 in test set. The GS-SVR model had the highest prediction efficiency and the lowest time complexity of the models. The results indicate that serum FT-IR spectroscopy combined with chemometric methods can predict tumor size in IDC patients. In addition, compared with traditional imaging methods, we found that the experimental results of the three models are better than traditional imaging methods in terms of correlation and fitting degree. And the average fitting error of PSO-BP-ANN and GA-BP-ANN models was less than 0.3 mm. The minimally invasive detection method is expected to be developed into a new clinical diagnostic method for tumor size estimation to reduce the diagnostic trauma of patients and provide new diagnostic experience for patients. Graphical Abstract.

Entities:  

Keywords:  Chemometric methods; Fourier transform infrared spectroscopy; GA-BP-ANN; GS-SVR; PSO-BP-ANN; Tumor size

Year:  2021        PMID: 33751160     DOI: 10.1007/s00216-021-03258-y

Source DB:  PubMed          Journal:  Anal Bioanal Chem        ISSN: 1618-2642            Impact factor:   4.142


  17 in total

1.  Direct orthogonal signal correction as data pretreatment in the classification of clinical lots of creams from near infrared spectroscopy data.

Authors:  J Luypaert; S Heuerding; D L Massart; Y Vander Heyden
Journal:  Anal Chim Acta       Date:  2006-09-23       Impact factor: 6.558

2.  Association between tumor size and immunohistochemical expression of Ki-67, p53 and BCL2 in a node-negative breast cancer population selected from a breast cancer screening program.

Authors:  Angel González-Sistal; Alicia Baltasar Sánchez; Ma Carmen Del Rio; José Ignacio Arias; Michel Herranz; Alvaro Ruibal
Journal:  Anticancer Res       Date:  2014-01       Impact factor: 2.480

3.  Applications of FT-IR spectrophotometry in cancer diagnostics.

Authors:  Andrei A Bunaciu; Vu Dang Hoang; Hassan Y Aboul-Enein
Journal:  Crit Rev Anal Chem       Date:  2015       Impact factor: 6.535

4.  Tumor Size of Invasive Breast Cancer on Magnetic Resonance Imaging and Conventional Imaging (Mammogram/Ultrasound): Comparison with Pathological Size and Clinical Implications.

Authors:  K H Haraldsdóttir; Þ Jónsson; A B Halldórsdóttir; K-G Tranberg; K S Ásgeirsson
Journal:  Scand J Surg       Date:  2016-07-08       Impact factor: 2.360

Review 5.  Tutorial: multivariate classification for vibrational spectroscopy in biological samples.

Authors:  Camilo L M Morais; Kássio M G Lima; Maneesh Singh; Francis L Martin
Journal:  Nat Protoc       Date:  2020-06-17       Impact factor: 13.491

6.  Identification and characterization of Aspergillus species of fruit rot fungi using microscopy, FT-IR, Raman and UV-Vis spectroscopy.

Authors:  F A Saif; S A Yaseen; A S Alameen; S B Mane; P B Undre
Journal:  Spectrochim Acta A Mol Biomol Spectrosc       Date:  2020-09-29       Impact factor: 4.098

7.  FT-IR imaging for quantitative determination of liver fat content in non-alcoholic fatty liver.

Authors:  K Kochan; E Maslak; S Chlopicki; M Baranska
Journal:  Analyst       Date:  2015-08-07       Impact factor: 4.616

8.  Prediction of breast tumor size by mammography and sonography--A breast screen experience.

Authors:  L J Dummin; M Cox; L Plant
Journal:  Breast       Date:  2006-07-18       Impact factor: 4.380

9.  Spectrochemical analysis of liquid biopsy harnessed to multivariate analysis towards breast cancer screening.

Authors:  Daniel L D Freitas; Ingrid M Câmara; Priscila P Silva; Nathália R S Wanderley; Maria B C Alves; Camilo L M Morais; Francis L Martin; Tirzah B P Lajus; Kassio M G Lima
Journal:  Sci Rep       Date:  2020-07-30       Impact factor: 4.379

10.  Improving data splitting for classification applications in spectrochemical analyses employing a random-mutation Kennard-Stone algorithm approach.

Authors:  Camilo L M Morais; Marfran C D Santos; Kássio M G Lima; Francis L Martin
Journal:  Bioinformatics       Date:  2019-12-15       Impact factor: 6.937

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