Literature DB >> 33750934

Chunkflow: hybrid cloud processing of large 3D images by convolutional nets.

Jingpeng Wu1,2, William M Silversmith1, Kisuk Lee1,3, H Sebastian Seung4,5.   

Abstract

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Year:  2021        PMID： 33750934     DOI： 10.1038/s41592-021-01088-5

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  5 in total

1.  Reconstruction of neocortex: Organelles, compartments, cells, circuits, and activity.

Authors:  Nicholas L Turner; Thomas Macrina; J Alexander Bae; Runzhe Yang; Alyssa M Wilson; Casey Schneider-Mizell; Kisuk Lee; Ran Lu; Jingpeng Wu; Agnes L Bodor; Adam A Bleckert; Derrick Brittain; Emmanouil Froudarakis; Sven Dorkenwald; Forrest Collman; Nico Kemnitz; Dodam Ih; William M Silversmith; Jonathan Zung; Aleksandar Zlateski; Ignacio Tartavull; Szi-Chieh Yu; Sergiy Popovych; Shang Mu; William Wong; Chris S Jordan; Manuel Castro; JoAnn Buchanan; Daniel J Bumbarger; Marc Takeno; Russel Torres; Gayathri Mahalingam; Leila Elabbady; Yang Li; Erick Cobos; Pengcheng Zhou; Shelby Suckow; Lynne Becker; Liam Paninski; Franck Polleux; Jacob Reimer; Andreas S Tolias; R Clay Reid; Nuno Maçarico da Costa; H Sebastian Seung
Journal:  Cell       Date:  2022-02-24       Impact factor: 66.850

2.  CUBIC-Cloud provides an integrative computational framework toward community-driven whole-mouse-brain mapping.

Authors:  Tomoyuki Mano; Ken Murata; Kazuhiro Kon; Chika Shimizu; Hiroaki Ono; Shoi Shi; Rikuhiro G Yamada; Kazunari Miyamichi; Etsuo A Susaki; Kazushige Touhara; Hiroki R Ueda
Journal:  Cell Rep Methods       Date:  2021-06-21

3.  RealNeuralNetworks.jl: An Integrated Julia Package for Skeletonization, Morphological Analysis, and Synaptic Connectivity Analysis of Terabyte-Scale 3D Neural Segmentations.

Authors:  Jingpeng Wu; Nicholas Turner; J Alexander Bae; Ashwin Vishwanathan; H Sebastian Seung
Journal:  Front Neuroinform       Date:  2022-03-02       Impact factor: 4.081

4.  An Integrated Toolkit for Extensible and Reproducible Neuroscience.

Authors:  Jordan K Matelsky; Luis M Rodriguez; Daniel Xenes; Timothy Gion; Robert Hider; Brock A Wester; William Gray-Roncal
Journal:  Annu Int Conf IEEE Eng Med Biol Soc       Date:  2021-11

5.  CONFIRMS: A Toolkit for Scalable, Black Box Connectome Assessment and Investigation.

Authors:  Caitlyn Bishop; Jordan Matelsky; Miller Wilt; Joseph Downs; Patricia Rivlin; Stephen Plaza; Brock Wester; William Gray-Roncal
Journal:  Annu Int Conf IEEE Eng Med Biol Soc       Date:  2021-11
  5 in total

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