Literature DB >> 33750857

Comparative analysis of machine learning algorithms for computer-assisted reporting based on fully automated cross-lingual RadLex mappings.

Máté E Maros1,2, Chang Gyu Cho3,4, Andreas G Junge3, Benedikt Kämpgen5, Victor Saase3, Fabian Siegel4, Frederik Trinkmann4, Thomas Ganslandt4, Christoph Groden3, Holger Wenz3.   

Abstract

Computer-assisted reporting (CAR) tools were suggested to improve radiology report quality by context-sensitively recommending key imaging biomarkers. However, studies evaluating machine learning (ML) algorithms on cross-lingual ontological (RadLex) mappings for developing embedded CAR algorithms are lacking. Therefore, we compared ML algorithms developed on human expert-annotated features against those developed on fully automated cross-lingual (German to English) RadLex mappings using 206 CT reports of suspected stroke. Target label was whether the Alberta Stroke Programme Early CT Score (ASPECTS) should have been provided (yes/no:154/52). We focused on probabilistic outputs of ML-algorithms including tree-based methods, elastic net, support vector machines (SVMs) and fastText (linear classifier), which were evaluated in the same 5 × fivefold nested cross-validation framework. This allowed for model stacking and classifier rankings. Performance was evaluated using calibration metrics (AUC, brier score, log loss) and -plots. Contextual ML-based assistance recommending ASPECTS was feasible. SVMs showed the highest accuracies both on human-extracted- (87%) and RadLex features (findings:82.5%; impressions:85.4%). FastText achieved the highest accuracy (89.3%) and AUC (92%) on impressions. Boosted trees fitted on findings had the best calibration profile. Our approach provides guidance for choosing ML classifiers for CAR tools in fully automated and language-agnostic fashion using bag-of-RadLex terms on limited expert-labelled training data.

Entities:  

Year:  2021        PMID: 33750857      PMCID: PMC7970897          DOI: 10.1038/s41598-021-85016-9

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  35 in total

Review 1.  Machine Learning in Medicine.

Authors:  Alvin Rajkomar; Jeffrey Dean; Isaac Kohane
Journal:  N Engl J Med       Date:  2019-04-04       Impact factor: 91.245

2.  Common Data Elements in Radiology.

Authors:  Daniel L Rubin; Charles E Kahn
Journal:  Radiology       Date:  2016-11-10       Impact factor: 11.105

3.  Contextual Radiology Reporting: A New Approach to Neuroradiology Structured Templates.

Authors:  M D Mamlouk; P C Chang; R R Saket
Journal:  AJNR Am J Neuroradiol       Date:  2018-06-14       Impact factor: 3.825

4.  Defining the target prior to prostate fusion biopsy: the effect of MRI reporting on cancer detection.

Authors:  Niklas Westhoff; Fabian Siegel; Christian Peter; Svetlana Hetjens; Stefan Porubsky; Thomas Martini; Jost von Hardenberg; Maurice Stephan Michel; Johannes Budjan; Manuel Ritter
Journal:  World J Urol       Date:  2018-07-02       Impact factor: 4.226

5.  Automated deep-neural-network surveillance of cranial images for acute neurologic events.

Authors:  Joseph J Titano; Marcus Badgeley; Javin Schefflein; Margaret Pain; Andres Su; Michael Cai; Nathaniel Swinburne; John Zech; Jun Kim; Joshua Bederson; J Mocco; Burton Drayer; Joseph Lehar; Samuel Cho; Anthony Costa; Eric K Oermann
Journal:  Nat Med       Date:  2018-08-13       Impact factor: 53.440

Review 6.  Natural Language Processing in Radiology: A Systematic Review.

Authors:  Ewoud Pons; Loes M M Braun; M G Myriam Hunink; Jan A Kors
Journal:  Radiology       Date:  2016-05       Impact factor: 11.105

7.  The ACR BI-RADS experience: learning from history.

Authors:  Elizabeth S Burnside; Edward A Sickles; Lawrence W Bassett; Daniel L Rubin; Carol H Lee; Debra M Ikeda; Ellen B Mendelson; Pamela A Wilcox; Priscilla F Butler; Carl J D'Orsi
Journal:  J Am Coll Radiol       Date:  2009-12       Impact factor: 5.532

8.  Machine learning workflows to estimate class probabilities for precision cancer diagnostics on DNA methylation microarray data.

Authors:  Máté E Maros; David Capper; David T W Jones; Volker Hovestadt; Andreas von Deimling; Stefan M Pfister; Axel Benner; Manuela Zucknick; Martin Sill
Journal:  Nat Protoc       Date:  2020-01-13       Impact factor: 13.491

Review 9.  High-performance medicine: the convergence of human and artificial intelligence.

Authors:  Eric J Topol
Journal:  Nat Med       Date:  2019-01-07       Impact factor: 53.440

Review 10.  Big data, artificial intelligence, and structured reporting.

Authors:  Daniel Pinto Dos Santos; Bettina Baeßler
Journal:  Eur Radiol Exp       Date:  2018-12-05
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