Literature DB >> 33746977

Analysis of m6A-Related Signatures in the Tumor Immune Microenvironment and Identification of Clinical Prognostic Regulators in Adrenocortical Carcinoma.

Yi Jin1,2,3, Zhanwang Wang1, Dong He4, Yuxing Zhu1, Xueying Hu1, Lian Gong1, Mengqing Xiao1, Xingyu Chen1, Yaxin Cheng1, Ke Cao1.   

Abstract

Adrenocortical carcinoma (ACC) is a rare endocrine malignancy with a high rate of mortality and recurrence. N6-methyladenosine methylation (m6A) is the most common modification to affect cancer development, but to date, the potential role of m6A regulators in ACC prognosis is not well understood. In this study, we systematically analyzed 21 m6A regulators in ACC samples from The Cancer Genome Atlas (TCGA) and the Gene Expression Omnibus (GEO) database. We identified three m6A modification patterns with different clinical outcomes and discovered a significant relationship between diverse m6A clusters and the tumor immune microenvironment (immune cell types and ESTIMATE algorithm). Additionally, Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG), and Gene Set Enrichment Analysis (GSEA) revealed that the m6A clusters were strongly associated with immune infiltration in the ACC. Next, to further explore the m6A prognostic signatures in ACC, we implemented Lasso (Least Absolute Shrinkage and Selection Operator) Cox regression to establish an eight-m6A-regulator prognostic model in the TCGA dataset, and the results showed that the model-based high-risk group was closely correlated with poor overall survival (OS) compared with the low-risk group. Subsequently, we validated the key modifications in the GEO datasets and found that high HNRNPA2B1 expression resulted in poor OS and event-free survival (EFS) in ACC. Moreover, to further decipher the molecular mechanisms, we constructed a competing endogenous RNA (ceRNA) network based on HNRNPA2B1, which consists of 12 long noncoding RNAs (lncRNAs) and 1 microRNA (miRNA). In conclusion, our findings indicate the potential role of m6A modification in ACC, providing novel insights into ACC prognosis and guiding effective immunotherapy.
Copyright © 2021 Jin, Wang, He, Zhu, Hu, Gong, Xiao, Chen, Cheng and Cao.

Entities:  

Keywords:  HNRNPA2B1; M6A; adrenocortical carcinoma; prognostic signatures; tumor immune microenvironment

Year:  2021        PMID: 33746977      PMCID: PMC7966528          DOI: 10.3389/fimmu.2021.637933

Source DB:  PubMed          Journal:  Front Immunol        ISSN: 1664-3224            Impact factor:   7.561


  54 in total

1.  Extent of disease at presentation and outcome for adrenocortical carcinoma: have we made progress?

Authors:  Electron Kebebew; Emily Reiff; Quan-Yang Duh; Orlo H Clark; Alex McMillan
Journal:  World J Surg       Date:  2006-05       Impact factor: 3.352

2.  miR-204-5p and miR-211-5p Contribute to BRAF Inhibitor Resistance in Melanoma.

Authors:  Marta Díaz-Martínez; Lucía Benito-Jardón; Lola Alonso; Lisa Koetz-Ploch; Eva Hernando; Joaquin Teixidó
Journal:  Cancer Res       Date:  2017-12-11       Impact factor: 12.701

3.  m6A mRNA methylation sustains Treg suppressive functions.

Authors:  Jiyu Tong; Guangchao Cao; Ting Zhang; Esen Sefik; Maria Carolina Amezcua Vesely; James P Broughton; Shu Zhu; Huabin Li; Bin Li; Lei Chen; Howard Y Chang; Bing Su; Richard A Flavell; Hua-Bing Li
Journal:  Cell Res       Date:  2018-01-05       Impact factor: 25.617

4.  Association Between Expression Level of PD1 by Tumor-Infiltrating CD8+ T Cells and Features of Hepatocellular Carcinoma.

Authors:  Hyung-Don Kim; Gi-Won Song; Seongyeol Park; Min Kyung Jung; Min Hwan Kim; Hyo Jeong Kang; Changhoon Yoo; Kijong Yi; Kyung Hwan Kim; Sukyeong Eo; Deok-Bog Moon; Seung-Mo Hong; Young Seok Ju; Eui-Cheol Shin; Shin Hwang; Su-Hyung Park
Journal:  Gastroenterology       Date:  2018-08-24       Impact factor: 22.682

5.  Pan-tumor genomic biomarkers for PD-1 checkpoint blockade-based immunotherapy.

Authors:  Razvan Cristescu; Robin Mogg; Mark Ayers; Andrew Albright; Erin Murphy; Jennifer Yearley; Xinwei Sher; Xiao Qiao Liu; Hongchao Lu; Michael Nebozhyn; Chunsheng Zhang; Jared K Lunceford; Andrew Joe; Jonathan Cheng; Andrea L Webber; Nageatte Ibrahim; Elizabeth R Plimack; Patrick A Ott; Tanguy Y Seiwert; Antoni Ribas; Terrill K McClanahan; Joanne E Tomassini; Andrey Loboda; David Kaufman
Journal:  Science       Date:  2018-10-12       Impact factor: 47.728

6.  RNA m6A methylation regulates the ultraviolet-induced DNA damage response.

Authors:  Yang Xiang; Benoit Laurent; Chih-Hung Hsu; Sigrid Nachtergaele; Zhike Lu; Wanqiang Sheng; Chuanyun Xu; Hao Chen; Jian Ouyang; Siqing Wang; Dominic Ling; Pang-Hung Hsu; Lee Zou; Ashwini Jambhekar; Chuan He; Yang Shi
Journal:  Nature       Date:  2017-03-15       Impact factor: 49.962

7.  RNA N6-methyladenosine demethylase FTO promotes breast tumor progression through inhibiting BNIP3.

Authors:  Yi Niu; Ziyou Lin; Arabella Wan; Honglei Chen; Heng Liang; Lei Sun; Yuan Wang; Xi Li; Xiao-Feng Xiong; Bo Wei; Xiaobin Wu; Guohui Wan
Journal:  Mol Cancer       Date:  2019-03-28       Impact factor: 27.401

Review 8.  The role of m6A RNA methylation in human cancer.

Authors:  Xiao-Yu Chen; Jing Zhang; Jin-Shui Zhu
Journal:  Mol Cancer       Date:  2019-05-29       Impact factor: 27.401

9.  Aberrant expression of enzymes regulating m6A mRNA methylation: implication in cancer.

Authors:  Natalia Pinello; Stephanie Sun; Justin Jong-Leong Wong
Journal:  Cancer Biol Med       Date:  2018-11       Impact factor: 4.248

10.  SNP2APA: a database for evaluating effects of genetic variants on alternative polyadenylation in human cancers.

Authors:  Yanbo Yang; Qiong Zhang; Ya-Ru Miao; Jiajun Yang; Wenqian Yang; Fangda Yu; Dongyang Wang; An-Yuan Guo; Jing Gong
Journal:  Nucleic Acids Res       Date:  2020-01-08       Impact factor: 16.971

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  26 in total

1.  The prognostic value and multiomic features of m6A-related risk signature in lung adenocarcinoma.

Authors:  Xiangcheng Wang; Qin Yu; Hongfang Yu; Yuzhe Wang; Liping Sun; Lei Yu; Hongwei Cui; Hao Yang
Journal:  Am J Transl Res       Date:  2022-08-15       Impact factor: 3.940

2.  Comprehensive analysis of the PD-L1 and immune infiltrates of N6-methyladenosine related long non-coding RNAs in bladder cancer.

Authors:  M Q Xue; Y L Wang; J C Wang; X D Wang; X J Wang; Y Q Zhang
Journal:  Sci Rep       Date:  2022-06-16       Impact factor: 4.996

3.  Prognostic Role of M6A-Associated Immune Genes and Cluster-Related Tumor Microenvironment Analysis: A Multi-Omics Practice in Stomach Adenocarcinoma.

Authors:  Na Luo; Min Fu; Yiling Zhang; Xiaoyu Li; Wenjun Zhu; Feng Yang; Ziqi Chen; Qi Mei; Xiaohong Peng; Lulu Shen; Yuanyuan Zhang; Qianxia Li; Guangyuan Hu
Journal:  Front Cell Dev Biol       Date:  2022-06-24

4.  Gene signature of m6A RNA regulators in diagnosis, prognosis, treatment, and immune microenvironment for cervical cancer.

Authors:  Shizhi Wang; Bo Ding; Shiyuan Wang; Wenjing Yan; Qianqian Xia; Dan Meng; Shuqian Xie; Siyuan Shen; Bingjia Yu; Haohan Liu; Jing Hu; Xing Zhang
Journal:  Sci Rep       Date:  2022-10-21       Impact factor: 4.996

Review 5.  Non-Coding RNA m6A Modification in Cancer: Mechanisms and Therapeutic Targets.

Authors:  Da-Hong Chen; Ji-Gang Zhang; Chuan-Xing Wu; Qin Li
Journal:  Front Cell Dev Biol       Date:  2021-12-22

6.  Comprehensive Analysis of m6A RNA Methylation Regulators in the Prognosis and Immune Microenvironment of Multiple Myeloma.

Authors:  Rui Liu; Ying Shen; Jinsong Hu; Xiaman Wang; Dong Wu; Meng Zhai; Ju Bai; Aili He
Journal:  Front Oncol       Date:  2021-11-04       Impact factor: 6.244

7.  Identification of a N6-Methyladenosine (m6A)-Related lncRNA Signature for Predicting the Prognosis and Immune Landscape of Lung Squamous Cell Carcinoma.

Authors:  Chengyin Weng; Lina Wang; Guolong Liu; Mingmei Guan; Lin Lu
Journal:  Front Oncol       Date:  2021-11-18       Impact factor: 6.244

8.  m6A-Related lncRNA to Develop Prognostic Signature and Predict the Immune Landscape in Bladder Cancer.

Authors:  Zuwei Li; Yuwu Li; Weizhang Zhong; Peiyuan Huang
Journal:  J Oncol       Date:  2021-07-24       Impact factor: 4.375

9.  Analysis and validation of m6A regulatory network: a novel circBACH2/has-miR-944/HNRNPC axis in breast cancer progression.

Authors:  Wenchang Lv; Yufang Tan; Mingchen Xiong; Chongru Zhao; Yichen Wang; Min Wu; Yiping Wu; Qi Zhang
Journal:  J Transl Med       Date:  2021-12-24       Impact factor: 5.531

10.  N6-Methylandenosine-Related lncRNA Signature Is a Novel Biomarkers of Prognosis and Immune Response in Colon Adenocarcinoma Patients.

Authors:  Peiling Zhang; Guolong Liu; Lin Lu
Journal:  Front Cell Dev Biol       Date:  2021-07-15
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