Literature DB >> 33746548

Virtual screening identifies a novel piperazine-based insect juvenile hormone agonist.

Taiyo Yokoi1, Taku Nabe1, Shinri Horoiwa1, Ken'ichiro Hayashi2, Sayoko Ito-Harashima3, Takashi Yagi3, Yoshiaki Nakagawa1, Hisashi Miyagawa1.   

Abstract

Juvenile hormone (JH) agonists constitute a subclass of insect growth regulators and play important roles in insect pest management. In this work, a multi-step virtual screening program was executed to find novel JH agonists. A database of 5 million purchasable compounds was sequentially processed with three computational filters: (i) shape and chemical similarity as compared to known JH-active compounds; (ii) molecular docking simulations against a Drosophila JH receptor, methoprene-tolerant; and (iii) free energy calculation of ligand-receptor binding using a modified MM/PBSA (molecular mechanics/Poisson-Boltzmann surface area) protocol. The 11 candidates that passed the three filters were evaluated in a luciferase reporter assay, leading to the identification of a hit compound that contains a piperazine ring system (EC50=870 nM). This compound is structurally dissimilar to known JH agonists and synthetically easy to access; therefore, it is a promising starting point for further structure optimization. © Pesticide Science Society of Japan 2021. This is an open access article distributed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0) License (https://creativecommons.org/licenses/by-nc-nd/4.0/).

Entities:  

Keywords:  Drosophila melanogaster; MM/PBSA; juvenile hormone agonist; methoprene-tolerant; molecular dynamics; virtual screening

Year:  2021        PMID: 33746548      PMCID: PMC7953028          DOI: 10.1584/jpestics.D20-074

Source DB:  PubMed          Journal:  J Pestic Sci        ISSN: 1348-589X            Impact factor:   2.529


  27 in total

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Authors:  K Ogata; H Umeyama
Journal:  J Mol Graph Model       Date:  2000-06       Impact factor: 2.518

2.  Ligand-binding properties of a juvenile hormone receptor, Methoprene-tolerant.

Authors:  Jean-Philippe Charles; Thomas Iwema; V Chandana Epa; Keiko Takaki; Jan Rynes; Marek Jindra
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-13       Impact factor: 11.205

3.  UCSF Chimera--a visualization system for exploratory research and analysis.

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Journal:  J Comput Chem       Date:  2004-10       Impact factor: 3.376

4.  Comparison of shape-matching and docking as virtual screening tools.

Authors:  Paul C D Hawkins; A Geoffrey Skillman; Anthony Nicholls
Journal:  J Med Chem       Date:  2007-01-11       Impact factor: 7.446

5.  Characterization of the Drosophila Methoprene -tolerant gene product. Juvenile hormone binding and ligand-dependent gene regulation.

Authors:  Ken Miura; Masahito Oda; Sumiko Makita; Yasuo Chinzei
Journal:  FEBS J       Date:  2005-03       Impact factor: 5.542

Review 6.  The juvenile hormone receptor as a target of juvenoid "insect growth regulators".

Authors:  Marek Jindra; Lenka Bittova
Journal:  Arch Insect Biochem Physiol       Date:  2019-09-10       Impact factor: 1.698

Review 7.  New insecticides with ecdysteroidal and juvenile hormone activity.

Authors:  T S Dhadialla; G R Carlson; D P Le
Journal:  Annu Rev Entomol       Date:  1998       Impact factor: 19.686

8.  Transcriptional regulation of juvenile hormone-mediated induction of Krüppel homolog 1, a repressor of insect metamorphosis.

Authors:  Takumi Kayukawa; Chieka Minakuchi; Toshiki Namiki; Toru Togawa; Michiyo Yoshiyama; Manabu Kamimura; Kazuei Mita; Shigeo Imanishi; Makoto Kiuchi; Yukio Ishikawa; Tetsuro Shinoda
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-02       Impact factor: 11.205

9.  ff14SB: Improving the Accuracy of Protein Side Chain and Backbone Parameters from ff99SB.

Authors:  James A Maier; Carmenza Martinez; Koushik Kasavajhala; Lauren Wickstrom; Kevin E Hauser; Carlos Simmerling
Journal:  J Chem Theory Comput       Date:  2015-07-23       Impact factor: 6.006

10.  CASTp 3.0: computed atlas of surface topography of proteins.

Authors:  Wei Tian; Chang Chen; Xue Lei; Jieling Zhao; Jie Liang
Journal:  Nucleic Acids Res       Date:  2018-07-02       Impact factor: 16.971

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  2 in total

1.  New ways and new hopes for IGR development.

Authors:  Marek Jindra
Journal:  J Pestic Sci       Date:  2021-02-20       Impact factor: 2.529

2.  Detection of juvenile hormone agonists by a new reporter gene assay using yeast expressing Drosophila methoprene-tolerant.

Authors:  Sayoko Ito-Harashima; Mai Matsuura; Eiji Takada; Masanobu Kawanishi; Yoshiaki Nakagawa; Takashi Yagi
Journal:  FEBS Open Bio       Date:  2021-08-30       Impact factor: 2.693

  2 in total

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