Literature DB >> 33746241

SOFAR: Large-Scale Association Network Learning.

Yoshimasa Uematsu1, Yingying Fan1, Kun Chen1, Jinchi Lv1, Wei Lin1.   

Abstract

Many modern big data applications feature large scale in both numbers of responses and predictors. Better statistical efficiency and scientific insights can be enabled by understanding the large-scale response-predictor association network structures via layers of sparse latent factors ranked by importance. Yet sparsity and orthogonality have been two largely incompatible goals. To accommodate both features, in this paper we suggest the method of sparse orthogonal factor regression (SOFAR) via the sparse singular value decomposition with orthogonality constrained optimization to learn the underlying association networks, with broad applications to both unsupervised and supervised learning tasks such as biclustering with sparse singular value decomposition, sparse principal component analysis, sparse factor analysis, and spare vector autoregression analysis. Exploiting the framework of convexity-assisted nonconvex optimization, we derive nonasymptotic error bounds for the suggested procedure characterizing the theoretical advantages. The statistical guarantees are powered by an efficient SOFAR algorithm with convergence property. Both computational and theoretical advantages of our procedure are demonstrated with several simulations and real data examples.

Entities:  

Keywords:  Big data; Large-scale association network; Latent factors; Nonconvex statistical learning; Orthogonality constrained optimization; Simultaneous response and predictor selection; Sparse singular value decomposition

Year:  2019        PMID: 33746241      PMCID: PMC7970712          DOI: 10.1109/tit.2019.2909889

Source DB:  PubMed          Journal:  IEEE Trans Inf Theory        ISSN: 0018-9448            Impact factor:   2.501


  18 in total

1.  Biclustering via sparse singular value decomposition.

Authors:  Mihee Lee; Haipeng Shen; Jianhua Z Huang; J S Marron
Journal:  Biometrics       Date:  2010-12       Impact factor: 2.571

2.  Principal Component Analysis With Sparse Fused Loadings.

Authors:  Jian Guo; Gareth James; Elizaveta Levina; George Michailidis; Ji Zhu
Journal:  J Comput Graph Stat       Date:  2010       Impact factor: 2.302

3.  Multiplicative updates for nonnegative quadratic programming.

Authors:  Fei Sha; Yuanqing Lin; Lawrence K Saul; Daniel D Lee
Journal:  Neural Comput       Date:  2007-08       Impact factor: 2.026

4.  A penalized matrix decomposition, with applications to sparse principal components and canonical correlation analysis.

Authors:  Daniela M Witten; Robert Tibshirani; Trevor Hastie
Journal:  Biostatistics       Date:  2009-04-17       Impact factor: 5.899

5.  ADAPTIVE ROBUST VARIABLE SELECTION.

Authors:  Jianqing Fan; Yingying Fan; Emre Barut
Journal:  Ann Stat       Date:  2014-02-01       Impact factor: 4.028

6.  The landscape of genetic complexity across 5,700 gene expression traits in yeast.

Authors:  Rachel B Brem; Leonid Kruglyak
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-19       Impact factor: 11.205

7.  Reduced rank regression via adaptive nuclear norm penalization.

Authors:  Kun Chen; Hongbo Dong; Kung-Sik Chan
Journal:  Biometrika       Date:  2013-12-04       Impact factor: 2.445

8.  Regularized Multivariate Regression for Identifying Master Predictors with Application to Integrative Genomics Study of Breast Cancer.

Authors:  Jie Peng; Ji Zhu; Anna Bergamaschi; Wonshik Han; Dong-Young Noh; Jonathan R Pollack; Pei Wang
Journal:  Ann Appl Stat       Date:  2010-03       Impact factor: 2.083

9.  A SPARSE CONDITIONAL GAUSSIAN GRAPHICAL MODEL FOR ANALYSIS OF GENETICAL GENOMICS DATA.

Authors:  Jianxin Yin; Hongzhe Li
Journal:  Ann Appl Stat       Date:  2011-12       Impact factor: 2.083

Review 10.  MAP kinase pathways in the yeast Saccharomyces cerevisiae.

Authors:  M C Gustin; J Albertyn; M Alexander; K Davenport
Journal:  Microbiol Mol Biol Rev       Date:  1998-12       Impact factor: 11.056

View more
  1 in total

1.  DeepLINK: Deep learning inference using knockoffs with applications to genomics.

Authors:  Zifan Zhu; Yingying Fan; Yinfei Kong; Jinchi Lv; Fengzhu Sun
Journal:  Proc Natl Acad Sci U S A       Date:  2021-09-07       Impact factor: 11.205

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.