Literature DB >> 33745308

Testing methods of linguistic homeland detection using synthetic data.

Søren Wichmann1,2, Taraka Rama3.   

Abstract

Two families of quantitative methods have been used to infer geographical homelands of language families: Bayesian phylogeography and the 'diversity method'. Bayesian methods model how populations may have moved using a phylogenetic tree as a backbone, while the diversity method assumes that the geographical area where linguistic diversity is highest likely corresponds to the homeland. No systematic tests of the performances of the different methods in a linguistic context have so far been published. Here, we carry out performance testing by simulating language families, including branching structures and word lists, along with speaker populations moving in space. We test six different methods: two versions of BayesTraits; the relaxed random walk model of BEAST 2; our own RevBayes implementations of a fixed rate and a variable rates random walk model; and the diversity method. As a result of the tests, we propose a hierarchy of performance of the different methods. Factors such as geographical idiosyncrasies, incomplete sampling, tree imbalance and small family sizes all have a negative impact on performance, but mostly across the board, the performance hierarchy generally being impervious to such factors. This article is part of the theme issue 'Reconstructing prehistoric languages'.

Entities:  

Keywords:  Bayesian phylogeography; historical linguistics; homelands; migration; phylogenetics

Mesh:

Year:  2021        PMID: 33745308      PMCID: PMC8059642          DOI: 10.1098/rstb.2020.0202

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  29 in total

1.  Evaluating phylogenetic tree shape: two modifications to Fusco & Cronk's method.

Authors:  Andy Purvis; Aris Katzourakis; Paul-Michael Agapow
Journal:  J Theor Biol       Date:  2002-01-07       Impact factor: 2.691

2.  Bayesian phylogenetic inference via Markov chain Monte Carlo methods.

Authors:  B Mau; M A Newton; B Larget
Journal:  Biometrics       Date:  1999-03       Impact factor: 2.571

3.  Phylogeography takes a relaxed random walk in continuous space and time.

Authors:  Philippe Lemey; Andrew Rambaut; John J Welch; Marc A Suchard
Journal:  Mol Biol Evol       Date:  2010-03-04       Impact factor: 16.240

Review 4.  Recent advances in computational phylodynamics.

Authors:  Guy Baele; Simon Dellicour; Marc A Suchard; Philippe Lemey; Bram Vrancken
Journal:  Curr Opin Virol       Date:  2018-09-22       Impact factor: 7.090

5.  Mapping the origins and expansion of the Indo-European language family.

Authors:  Remco Bouckaert; Philippe Lemey; Michael Dunn; Simon J Greenhill; Alexander V Alekseyenko; Alexei J Drummond; Russell D Gray; Marc A Suchard; Quentin D Atkinson
Journal:  Science       Date:  2012-08-24       Impact factor: 47.728

6.  Trait-Dependent Biogeography: (Re)Integrating Biology into Probabilistic Historical Biogeographical Models.

Authors:  Jeet Sukumaran; L Lacey Knowles
Journal:  Trends Ecol Evol       Date:  2018-04-21       Impact factor: 17.712

7.  MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space.

Authors:  Fredrik Ronquist; Maxim Teslenko; Paul van der Mark; Daniel L Ayres; Aaron Darling; Sebastian Höhna; Bret Larget; Liang Liu; Marc A Suchard; John P Huelsenbeck
Journal:  Syst Biol       Date:  2012-02-22       Impact factor: 15.683

8.  Relaxed phylogenetics and dating with confidence.

Authors:  Alexei J Drummond; Simon Y W Ho; Matthew J Phillips; Andrew Rambaut
Journal:  PLoS Biol       Date:  2006-03-14       Impact factor: 8.029

9.  The Potential of Automatic Word Comparison for Historical Linguistics.

Authors:  Johann-Mattis List; Simon J Greenhill; Russell D Gray
Journal:  PLoS One       Date:  2017-01-27       Impact factor: 3.240

10.  Epidemiological hypothesis testing using a phylogeographic and phylodynamic framework.

Authors:  Simon Dellicour; Sebastian Lequime; Bram Vrancken; Mandev S Gill; Paul Bastide; Karthik Gangavarapu; Nathaniel L Matteson; Yi Tan; Louis du Plessis; Alexander A Fisher; Martha I Nelson; Marius Gilbert; Marc A Suchard; Kristian G Andersen; Nathan D Grubaugh; Oliver G Pybus; Philippe Lemey
Journal:  Nat Commun       Date:  2020-11-06       Impact factor: 14.919

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  1 in total

1.  Reconstructing prehistoric languages.

Authors:  Antonio Benítez-Burraco; Ljiljana Progovac
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2021-03-22       Impact factor: 6.237

  1 in total

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