Literature DB >> 33737950

Spliceosomal snRNA Epitranscriptomics.

Pedro Morais1, Hironori Adachi2, Yi-Tao Yu2.   

Abstract

Small nuclear RNAs (snRNAs) are critical components of the spliceosome that catalyze the splicing of pre-mRNA. snRNAs are each complexed with many proteins to form RNA-protein complexes, termed as small nuclear ribonucleoproteins (snRNPs), in the cell nucleus. snRNPs participate in pre-mRNA splicing by recognizing the critical sequence elements present in the introns, thereby forming active spliceosomes. The recognition is achieved primarily by base-pairing interactions (or nucleotide-nucleotide contact) between snRNAs and pre-mRNA. Notably, snRNAs are extensively modified with different RNA modifications, which confer unique properties to the RNAs. Here, we review the current knowledge of the mechanisms and functions of snRNA modifications and their biological relevance in the splicing process.
Copyright © 2021 Morais, Adachi and Yu.

Entities:  

Keywords:  2'-O-methylation; N2-methylation; N6-methyladenosine; RNA modifications; epitranscriptomics; pre-mRNA splicing; pseudouridine; small nuclear RNA

Year:  2021        PMID: 33737950      PMCID: PMC7960923          DOI: 10.3389/fgene.2021.652129

Source DB:  PubMed          Journal:  Front Genet        ISSN: 1664-8021            Impact factor:   4.599


  14 in total

1.  Changes in the Small Noncoding RNAome During M1 and M2 Macrophage Polarization.

Authors:  Ding Ma; Xing Zhou; Yu Wang; Liming Dai; Jie Yuan; Jianping Peng; Xiaoling Zhang; Chuandong Wang
Journal:  Front Immunol       Date:  2022-05-10       Impact factor: 8.786

Review 2.  Pseudouridines in RNAs: switching atoms means shifting paradigms.

Authors:  Ting-Yu Lin; Rahul Mehta; Sebastian Glatt
Journal:  FEBS Lett       Date:  2021-09-13       Impact factor: 3.864

3.  Structure Characterization of Escherichia coli Pseudouridine Kinase PsuK.

Authors:  Xiaojia Li; Kangjie Li; Wenting Guo; Yan Wen; Chunyan Meng; Baixing Wu
Journal:  Front Microbiol       Date:  2022-06-17       Impact factor: 6.064

Review 4.  Mechanisms of lncRNA biogenesis as revealed by nascent transcriptomics.

Authors:  Takayuki Nojima; Nick J Proudfoot
Journal:  Nat Rev Mol Cell Biol       Date:  2022-01-25       Impact factor: 113.915

5.  Combined exposure to polychlorinated biphenyls and high-fat diet modifies the global epitranscriptomic landscape in mouse liver.

Authors:  Carolyn M Klinge; Kellianne M Piell; Belinda J Petri; Liqing He; Xiang Zhang; Jianmin Pan; Shesh N Rai; Kalina Andreeva; Eric C Rouchka; Banrida Wahlang; Juliane I Beier; Matthew C Cave
Journal:  Environ Epigenet       Date:  2021-09-17

Review 6.  The Progress and Promise of RNA Medicine─An Arsenal of Targeted Treatments.

Authors:  Janet M Sasso; Barbara J B Ambrose; Rumiana Tenchov; Ruchira S Datta; Matthew T Basel; Robert K DeLong; Qiongqiong Angela Zhou
Journal:  J Med Chem       Date:  2022-05-09       Impact factor: 8.039

7.  PAMP-triggered genetic reprogramming involves widespread alternative transcription initiation and an immediate transcription factor wave.

Authors:  Axel Thieffry; Diego López-Márquez; Jette Bornholdt; Mojgan Gholami Malekroudi; Simon Bressendorff; Andrea Barghetti; Albin Sandelin; Peter Brodersen
Journal:  Plant Cell       Date:  2022-07-04       Impact factor: 12.085

Review 8.  Guide RNA acrobatics: the one-for-two shuffle.

Authors:  U Thomas Meier
Journal:  Genes Dev       Date:  2022-01-01       Impact factor: 12.890

Review 9.  From Antisense RNA to RNA Modification: Therapeutic Potential of RNA-Based Technologies.

Authors:  Hironori Adachi; Martin Hengesbach; Yi-Tao Yu; Pedro Morais
Journal:  Biomedicines       Date:  2021-05-14

10.  Nopp140-chaperoned 2'-O-methylation of small nuclear RNAs in Cajal bodies ensures splicing fidelity.

Authors:  Jonathan Bizarro; Svetlana Deryusheva; Ludivine Wacheul; Varun Gupta; Felix G M Ernst; Denis L J Lafontaine; Joseph G Gall; U Thomas Meier
Journal:  Genes Dev       Date:  2021-07-22       Impact factor: 11.361

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