Literature DB >> 33737370

Draft Genome Sequence of Enterococcus faecalis AS003, a Strain Possessing All Three Type II-a CRISPR Loci.

Kevin B Mulkerrins1, Casandra Lyons1, Michael P Shiaris2.   

Abstract

Enterococcus faecalis is a clinically significant member of the human microbiome. Three CRISPR-Cas loci are located in conserved locations. Previous studies provide evidence that E. faecalis strains with functional CRISPR-Cas genes are negatively correlated with antibiotic resistance. Here, we report the genome sequence of an unusual strain possessing all three CRISPR-Cas loci.
Copyright © 2021 Mulkerrins et al.

Entities:  

Year:  2021        PMID: 33737370      PMCID: PMC7975888          DOI: 10.1128/MRA.01449-20

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN: 2576-098X


  12 in total

1.  Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy.

Authors:  Qiong Wang; George M Garrity; James M Tiedje; James R Cole
Journal:  Appl Environ Microbiol       Date:  2007-06-22       Impact factor: 4.792

Review 2.  The ecology, epidemiology and virulence of Enterococcus.

Authors:  Katie Fisher; Carol Phillips
Journal:  Microbiology       Date:  2009-04-21       Impact factor: 2.777

3.  A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data.

Authors:  David Coil; Guillaume Jospin; Aaron E Darling
Journal:  Bioinformatics       Date:  2014-10-22       Impact factor: 6.937

4.  Genome-wide correlation analysis suggests different roles of CRISPR-Cas systems in the acquisition of antibiotic resistance genes in diverse species.

Authors:  Saadlee Shehreen; Te-Yuan Chyou; Peter C Fineran; Chris M Brown
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2019-05-13       Impact factor: 6.237

5.  Multidrug-resistant enterococci lack CRISPR-cas.

Authors:  Kelli L Palmer; Michael S Gilmore
Journal:  mBio       Date:  2010-10-12       Impact factor: 7.867

Review 6.  Evolutionary classification of CRISPR-Cas systems: a burst of class 2 and derived variants.

Authors:  Kira S Makarova; Yuri I Wolf; Jaime Iranzo; Sergey A Shmakov; Omer S Alkhnbashi; Stan J J Brouns; Emmanuelle Charpentier; David Cheng; Daniel H Haft; Philippe Horvath; Sylvain Moineau; Francisco J M Mojica; David Scott; Shiraz A Shah; Virginijus Siksnys; Michael P Terns; Česlovas Venclovas; Malcolm F White; Alexander F Yakunin; Winston Yan; Feng Zhang; Roger A Garrett; Rolf Backofen; John van der Oost; Rodolphe Barrangou; Eugene V Koonin
Journal:  Nat Rev Microbiol       Date:  2019-12-19       Impact factor: 60.633

7.  RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes.

Authors:  Thomas Brettin; James J Davis; Terry Disz; Robert A Edwards; Svetlana Gerdes; Gary J Olsen; Robert Olson; Ross Overbeek; Bruce Parrello; Gordon D Pusch; Maulik Shukla; James A Thomason; Rick Stevens; Veronika Vonstein; Alice R Wattam; Fangfang Xia
Journal:  Sci Rep       Date:  2015-02-10       Impact factor: 4.379

8.  Comparative Analysis of the Orphan CRISPR2 Locus in 242 Enterococcus faecalis Strains.

Authors:  Karthik Hullahalli; Marinelle Rodrigues; Brendan D Schmidt; Xiang Li; Pooja Bhardwaj; Kelli L Palmer
Journal:  PLoS One       Date:  2015-09-23       Impact factor: 3.240

9.  Comprehensive analysis of phospholipids and glycolipids in the opportunistic pathogen Enterococcus faecalis.

Authors:  Rafi Rashid; Amaury Cazenave-Gassiot; Iris H Gao; Zeus J Nair; Jaspal K Kumar; Liang Gao; Kimberly A Kline; Markus R Wenk
Journal:  PLoS One       Date:  2017-04-19       Impact factor: 3.240

10.  Comparative genomics of multidrug-resistant Enterococcus spp. isolated from wastewater treatment plants.

Authors:  Haley Sanderson; Rodrigo Ortega-Polo; Rahat Zaheer; Noriko Goji; Kingsley K Amoako; R Stephen Brown; Anna Majury; Steven N Liss; Tim A McAllister
Journal:  BMC Microbiol       Date:  2020-01-24       Impact factor: 3.605

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