Literature DB >> 33737366

Complete Genome Sequence of the Bacterial Component of Mysorin Biopreparation.

Alexey M Afonin1, Emma S Gribchenko2, Gulnar A Akhtemova2, Yuri V Laktionov2, Andrej P Kozhemyakov2, Vladimir A Zhukov2.   

Abstract

Plants can form various beneficial associations with soil microorganisms, such as associations with plant growth-promoting bacteria (PGPB). In this work, we report the full-genome sequence of the component of Mysorin biopreparation, identified as Microbacterium hominis, consisting of a single 3.5-Mbp circular chromosome.
Copyright © 2021 Afonin et al.

Entities:  

Year:  2021        PMID： 33737366      PMCID： PMC7975884          DOI： 10.1128/MRA.01287-20

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  11 in total

1.  Assembly of long, error-prone reads using repeat graphs.

Authors:  Mikhail Kolmogorov; Jeffrey Yuan; Yu Lin; Pavel A Pevzner
Journal:  Nat Biotechnol       Date:  2019-04-01       Impact factor: 54.908

2.  R factor transfer in Rhizobium leguminosarum.

Authors:  J E Beringer
Journal:  J Gen Microbiol       Date:  1974-09

3.  BLAST+: architecture and applications.

Authors:  Christiam Camacho; George Coulouris; Vahram Avagyan; Ning Ma; Jason Papadopoulos; Kevin Bealer; Thomas L Madden
Journal:  BMC Bioinformatics       Date:  2009-12-15       Impact factor: 3.169

4.  The natural product domain seeker NaPDoS: a phylogeny based bioinformatic tool to classify secondary metabolite gene diversity.

Authors:  Nadine Ziemert; Sheila Podell; Kevin Penn; Jonathan H Badger; Eric Allen; Paul R Jensen
Journal:  PLoS One       Date:  2012-03-29       Impact factor: 3.240

5.  Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.

Authors:  Bruce J Walker; Thomas Abeel; Terrance Shea; Margaret Priest; Amr Abouelliel; Sharadha Sakthikumar; Christina A Cuomo; Qiandong Zeng; Jennifer Wortman; Sarah K Young; Ashlee M Earl
Journal:  PLoS One       Date:  2014-11-19       Impact factor: 3.240

6.  Fast and accurate de novo genome assembly from long uncorrected reads.

Authors:  Robert Vaser; Ivan Sović; Niranjan Nagarajan; Mile Šikić
Journal:  Genome Res       Date:  2017-01-18       Impact factor: 9.043

7.  BAGEL4: a user-friendly web server to thoroughly mine RiPPs and bacteriocins.

Authors:  Auke J van Heel; Anne de Jong; Chunxu Song; Jakob H Viel; Jan Kok; Oscar P Kuipers
Journal:  Nucleic Acids Res       Date:  2018-07-02       Impact factor: 16.971

8.  antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline.

Authors:  Kai Blin; Simon Shaw; Katharina Steinke; Rasmus Villebro; Nadine Ziemert; Sang Yup Lee; Marnix H Medema; Tilmann Weber
Journal:  Nucleic Acids Res       Date:  2019-07-02       Impact factor: 16.971

9.  PHI-base: the pathogen-host interactions database.

Authors:  Martin Urban; Alayne Cuzick; James Seager; Valerie Wood; Kim Rutherford; Shilpa Yagwakote Venkatesh; Nishadi De Silva; Manuel Carbajo Martinez; Helder Pedro; Andy D Yates; Keywan Hassani-Pak; Kim E Hammond-Kosack
Journal:  Nucleic Acids Res       Date:  2020-01-08       Impact factor: 16.971

10.  Draft Genome Sequence of Sinorhizobium meliloti AK555.

Authors:  Victoria S Muntyan; Olga A Baturina; Alexey M Afonin; Maria E Cherkasova; Yuri V Laktionov; Alla S Saksaganskaya; Marsel R Kabilov; Marina L Roumiantseva
Journal:  Microbiol Resour Announc       Date:  2019-01-10
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