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Literature DB >> 33737363

Genome Sequences of Microviruses Identified in Gila Monster Feces.

Courtney L Collins¹, Dale F DeNardo², Mellecha Blake², Jessica Norton¹, Kara Schmidlin¹, Rafaela S Fontenele^1,2, Melissa A Wilson^2,3, Simona Kraberger¹, Arvind Varsani^4,2,3,5.

Abstract

The complete genome sequences of 33 microviruses were determined from fecal samples collected from 14 Arizona-dwelling Gila monsters using high-throughput sequencing. These microviruses with genomes 4,383 to 6,782 nucleotides (nt) long were broadly distributed across the 14 samples.

Entities: Chemical Species

Year: 2021 PMID： 33737363 PMCID： PMC7975881 DOI： 10.1128/MRA.00163-21

Source DB: PubMed Journal: Microbiol Resour Announc ISSN： 2576-098X

18 in total

1. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.

Authors: Anton Bankevich; Sergey Nurk; Dmitry Antipov; Alexey A Gurevich; Mikhail Dvorkin; Alexander S Kulikov; Valery M Lesin; Sergey I Nikolenko; Son Pham; Andrey D Prjibelski; Alexey V Pyshkin; Alexander V Sirotkin; Nikolay Vyahhi; Glenn Tesler; Max A Alekseyev; Pavel A Pevzner
Journal: J Comput Biol Date: 2012-04-16 Impact factor: 1.479

2. Basic local alignment search tool.

Authors: S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal: J Mol Biol Date: 1990-10-05 Impact factor: 5.469

3. RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes.

Authors: Thomas Brettin; James J Davis; Terry Disz; Robert A Edwards; Svetlana Gerdes; Gary J Olsen; Robert Olson; Ross Overbeek; Bruce Parrello; Gordon D Pusch; Maulik Shukla; James A Thomason; Rick Stevens; Veronika Vonstein; Alice R Wattam; Fangfang Xia
Journal: Sci Rep Date: 2015-02-10 Impact factor: 4.379

4. Diversity and comparative genomics of Microviridae in Sphagnum- dominated peatlands.

Authors: Achim Quaiser; Alexis Dufresne; Flore Ballaud; Simon Roux; Yvan Zivanovic; Jonathan Colombet; Télesphore Sime-Ngando; André-Jean Francez
Journal: Front Microbiol Date: 2015-04-28 Impact factor: 5.640

5. Genome Sequence of a Single-Stranded DNA Virus Identified in Gila Monster Feces.

Authors: Vasishta Somayaji; Dale DeNardo; Melissa A Wilson Sayres; Mellecha Blake; Kara Waits; Rafaela S Fontenele; Simona Kraberger; Arvind Varsani
Journal: Microbiol Resour Announc Date: 2018-08-23

6. Unprecedented Diversity of ssDNA Phages from the Family Microviridae Detected within the Gut of a Protochordate Model Organism (Ciona robusta).

Authors: Alexandria Creasy; Karyna Rosario; Brittany A Leigh; Larry J Dishaw; Mya Breitbart
Journal: Viruses Date: 2018-07-31 Impact factor: 5.048

Genome Sequences of Microviruses Identified in Gila Monster Feces.

1. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.

2. Basic local alignment search tool.

3. RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes.

4. Diversity and comparative genomics of Microviridae in Sphagnum- dominated peatlands.

5. Genome Sequence of a Single-Stranded DNA Virus Identified in Gila Monster Feces.

6. Unprecedented Diversity of ssDNA Phages from the Family Microviridae Detected within the Gut of a Protochordate Model Organism (Ciona robusta).

7. Genome Sequences of Microviruses Associated with Coptotermes formosanus.

8. Resurrection of a global, metagenomically defined gokushovirus.

9. Trimmomatic: a flexible trimmer for Illumina sequence data.

10. Single Stranded DNA Viruses Associated with Capybara Faeces Sampled in Brazil.

1. Genome Sequences of Microviruses Identified in a Sample from a Sewage Treatment Oxidation Pond.

2. Organizing the Global Diversity of Microviruses.

3. Diverse Single-Stranded DNA Viruses Identified in Chicken Buccal Swabs.