Literature DB >> 33737354

Complete Genome Analysis of Campylobacter jejuni subsp. jejuni Isolated from Bloodstream Infection.

Jaya Lakshmi Ss1, Dhiviya Prabaa Muthuirulandi Sethuvel1, Ashtawarthani Baskaran1, Balaji Veeraraghavan2.   

Abstract

We report here the complete genome analysis of a clinical Campylobacter jejuni strain sequenced by a hybrid assembly approach. A hybrid assembly approach provided a complete genome sequence of C. jejuni that contains a 1,681,375-bp chromosome and 47,467-bp plasmid carrying various virulence and antimicrobial resistance determinants.
Copyright © 2021 SS et al.

Entities:  

Year:  2021        PMID： 33737354      PMCID： PMC7975872          DOI： 10.1128/MRA.00065-21

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  13 in total

1.  SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.

Authors:  Anton Bankevich; Sergey Nurk; Dmitry Antipov; Alexey A Gurevich; Mikhail Dvorkin; Alexander S Kulikov; Valery M Lesin; Sergey I Nikolenko; Son Pham; Andrey D Prjibelski; Alexey V Pyshkin; Alexander V Sirotkin; Nikolay Vyahhi; Glenn Tesler; Max A Alekseyev; Pavel A Pevzner
Journal:  J Comput Biol       Date:  2012-04-16       Impact factor: 1.479

2.  Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.

Authors:  Bruce J Walker; Thomas Abeel; Terrance Shea; Margaret Priest; Amr Abouelliel; Sharadha Sakthikumar; Christina A Cuomo; Qiandong Zeng; Jennifer Wortman; Sarah K Young; Ashlee M Earl
Journal:  PLoS One       Date:  2014-11-19       Impact factor: 3.240

3.  Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.

Authors:  Ryan R Wick; Louise M Judd; Claire L Gorrie; Kathryn E Holt
Journal:  PLoS Comput Biol       Date:  2017-06-08       Impact factor: 4.475

4.  Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation.

Authors:  Sergey Koren; Brian P Walenz; Konstantin Berlin; Jason R Miller; Nicholas H Bergman; Adam M Phillippy
Journal:  Genome Res       Date:  2017-03-15       Impact factor: 9.043

5.  Genetic characterisation of virulence genes associated with adherence, invasion and cytotoxicity in Campylobacter spp. isolated from commercial chickens and human clinical cases.

Authors:  Samantha Reddy; Oliver T Zishiri
Journal:  Onderstepoort J Vet Res       Date:  2018-02-15       Impact factor: 1.792

6.  VFDB 2019: a comparative pathogenomic platform with an interactive web interface.

Authors:  Bo Liu; Dandan Zheng; Qi Jin; Lihong Chen; Jian Yang
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

7.  Complete genome analysis of clinical Shigella strains reveals plasmid pSS1653 with resistance determinants: a triumph of hybrid approach.

Authors:  Dhiviya Prabaa Muthuirulandi Sethuvel; Balaji Veeraraghavan; Karthick Vasudevan; Naveen Kumar Devanga Ragupathi; Dhivya Murugan; Kamini Walia; Shalini Anandan
Journal:  Gut Pathog       Date:  2019-11-06       Impact factor: 4.181

8.  Comparative genomics and genome biology of invasive Campylobacter jejuni.

Authors:  C P A Skarp; O Akinrinade; A J E Nilsson; P Ellström; S Myllykangas; H Rautelin
Journal:  Sci Rep       Date:  2015-11-25       Impact factor: 4.379

Review 9.  Antimicrobial resistance mechanisms among Campylobacter.

Authors:  Kinga Wieczorek; Jacek Osek
Journal:  Biomed Res Int       Date:  2013-06-24       Impact factor: 3.411

10.  BacWGSTdb 2.0: a one-stop repository for bacterial whole-genome sequence typing and source tracking.

Authors:  Ye Feng; Shengmei Zou; Hangfei Chen; Yunsong Yu; Zhi Ruan
Journal:  Nucleic Acids Res       Date:  2021-01-08       Impact factor: 16.971
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