| Literature DB >> 33734389 |
Minh M Nguyen1, Jose Gil2, Wendy Hahn1, Thai Dong1, John Paulson1, Dustin Stevens1, Henriett Zahn1, Brinna Zimmer1, Stephen Erickson1.
Abstract
BACKGROUND: The PhageDx™ Listeria Assay is a simple, specific, and sensitive assay based on the infection of Listeria spp. by selected bacteriophages and the resultant expression of a luciferase reporter gene. Results are generated in as little as 24.5 h for stainless steel and ceramic environmental surfaces.Entities:
Mesh:
Substances:
Year: 2021 PMID: 33734389 PMCID: PMC8665739 DOI: 10.1093/jaoacint/qsab036
Source DB: PubMed Journal: J AOAC Int ISSN: 1060-3271 Impact factor: 1.913
Robustness study: impact of varying infection time, phage concentration, lysis/luciferase master mix concentration on PhageDx Listeria Assay results—POD comparison
| Test condition | Test parameters | Nc | Test condition results | Nominal condition resultsb | dPODTN | 95% CI | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Infection | Volume | Volume substrate, µL | xd |
| 95% CI | x | PODN | 95% CI | |||||
| Stainless steel surface—inoculated with | |||||||||||||
| 1 | 3.5 | 8 | 60 | 10 | 4 | 0.40 | 0.17, 0.69 | 4 | 0.40 | 0.17, 0.69 | 0.0 | −0.25, 0.25 | |
| 2 | 3.5 | 8 | 70 | 10 | 4 | 0.40 | 0.17, 0.69 | 4 | 0.40 | 0.17, 0.69 | 0.0 | −0.25, 0.25 | |
| 3 | 3.5 | 12 | 60 | 10 | 4 | 0.40 | 0.17, 0.69 | 4 | 0.40 | 0.17, 0.69 | 0.0 | −0.25, 0.25 | |
| 4 | 3.5 | 12 | 70 | 10 | 4 | 0.40 | 0.17, 0.69 | 4 | 0.40 | 0.17, 0.69 | 0.0 | −0.25, 0.25 | |
| 5 | 4.5 | 8 | 60 | 10 | 4 | 0.40 | 0.17, 0.69 | 4 | 0.40 | 0.17, 0.69 | 0.0 | −0.25, 0.25 | |
| 6 | 4.5 | 8 | 70 | 10 | 4 | 0.40 | 0.17, 0.69 | 4 | 0.40 | 0.17, 0.69 | 0.0 | −0.25, 0.25 | |
| 7 | 4.5 | 12 | 60 | 10 | 4 | 0.40 | 0.17, 0.69 | 4 | 0.40 | 0.17, 0.69 | 0.0 | −0.25, 0.25 | |
| 8 | 4.5 | 12 | 70 | 10 | 4 | 0.40 | 0.17, 0.69 | 4 | 0.40 | 0.17, 0.69 | 0.0 | −0.25, 0.25 | |
| Stainless steel surface—inoculated with | |||||||||||||
| 1 | 3.5 | 8 | 60 | 10 | 0 | 0.0 | 0.00, 0.28 | 0 | 0.0 | 0.00, 0.28 | 0.0 | −0.25, 0.25 | |
| 2 | 3.5 | 8 | 70 | 10 | 0 | 0.0 | 0.00, 0.28 | 0 | 0.0 | 0.00, 0.28 | 0.0 | −0.25, 0.25 | |
| 3 | 3.5 | 12 | 60 | 10 | 0 | 0.0 | 0.00, 0.28 | 0 | 0.0 | 0.00, 0.28 | 0.0 | −0.25, 0.25 | |
| 4 | 3.5 | 12 | 70 | 10 | 0 | 0.0 | 0.00, 0.28 | 0 | 0.0 | 0.00, 0.28 | 0.0 | −0.25, 0.25 | |
| 5 | 4.5 | 8 | 60 | 10 | 0 | 0.0 | 0.00, 0.28 | 0 | 0.0 | 0.00, 0.28 | 0.0 | −0.25, 0.25 | |
| 6 | 4.5 | 8 | 70 | 10 | 0 | 0.0 | 0.00, 0.28 | 0 | 0.0 | 0.00, 0.28 | 0.0 | −0.25, 0.25 | |
| 7 | 4.5 | 12 | 60 | 10 | 0 | 0.0 | 0.00, 0.28 | 0 | 0.0 | 0.00, 0.28 | 0.0 | −0.25, 0.25 | |
| 8 | 4.5 | 12 | 70 | 10 | 0 | 0.0 | 0.00, 0.28 | 0 | 0.0 | 0.00, 0.28 | 0.0 | −0.25, 0.25 | |
Each test condition is being compared to the nominal test condition.
Nominal condition = 4 h infection, 10 µL phage, 65 µL lysis/luciferase master mix substrate.
N = Number of test portions per condition.
x = Number of positive test portions per condition.
PODT = Positive outcomes divided by the total number of trials per condition.
PODN = Positive outcomes divided by the total number of trials per nominal condition.
dPODTN = Difference in POD between the test condition and nominal condition.
95% CI = If the confidence interval of a dPOD does not contain zero, then the difference is statistically significant at the 5% level.
PhageDx Listeria inclusivity list
| No. | Species | Serogroup | Source | Origin | PhageDx Result |
|---|---|---|---|---|---|
| 1 |
| 1/2a | ATCC 15313 | Rabbit | Positive |
| 2 |
| 1/2a | ATCC 51774 | Human | Positive |
| 3 |
| 1/2a | ATCC 35152 | Guinea Pig | Positive |
| 4 |
| 1/2a | ATCC BAA-679 | Rabbit | Positive |
| 5 |
| 1/2a | ATCC 51775 | Cheese | Positive |
| 6 |
| 1/2a | ATCC 19111 | Poultry | Positive |
| 7 |
| 1/2a | ATCC 51772 | Cheese | Positive |
| 8 |
| 1/2b | ATCC BAA-751 | Not available | Positive |
| 9 |
| 1/2b | ATCC BAA-839 | Not available | Positive |
| 10 |
| 1/2b | ATCC 51780 | Cheese | Positive |
| 11 |
| 1/2c | ATCC 51779 | Cheese | Positive |
| 12 |
| 2 | ATCC 9525 | Not available | Positive |
| 13 |
| 1/2C | ATCC 19112 | Human | Positive |
| 14 |
| 3a | ATCC 19113 | Human | Positive |
| 15 |
| 3a | ATCC 51782 | Cheese | Positive |
| 16 |
| 4 | ATCC 51781 | Not available | Positive |
| 17 |
| 4a | ATCC 19114 | Sheep | Positive |
| 18 |
| 4b | ATCC 19115 | Human | Positive |
| 19 |
| 4b | Cornell FSL-J1-225 | Not available | Positive |
| 20 |
| 4b | ATCC 51776 | Cheese | Positive |
| 21 |
| 4b | ATCC 51778 | Cheese | Positive |
| 22 |
| 4b | ATCC 13932 | Human | Positive |
| 23 |
| 4b | ATCC 51777 | Cheese | Positive |
| 24 |
| 4c | ATCC 19116 | Chicken | Positive |
| 25 |
| 4d | ATCC 19117 | Sheep | Positive |
| 26 |
| 4e | ATCC 19118 | Chicken | Positive |
| 27 |
| ATCC 700402 | Not available | Positive | |
| 28 |
| ATCC 7302 | Not available | Positive | |
| 29 |
| ATCC 7644 | Not available | Positive | |
| 30 |
| ATCC 23074 | Not available | Positive | |
| 31 |
| ATCC 23073 | Not available | Positive | |
| 32 |
| ATCC 43256 | Not available | Positive | |
| 33 |
| ATCC 984 | Not available | Positive | |
| 34 |
| 4a | UVM CWD 1554 | Not available | Positive |
| 35 |
| ATCC 19120 | Not available | Positive | |
| 36 |
| ATCC 25401 | Not available | Positive | |
| 37 |
| ATCC 700545 | Not available | Positive | |
| 38 |
| QL 30911.12f | Environmental sample | Positive | |
| 39 |
| NCTC10814g | Not available | Positive | |
| 40 |
| 6a | ATCC 33090 | Not available | Positive |
| 41 |
| ATCC 51742 | Not available | Positive | |
| 42 |
| 6b | ATCC 33091 | Not available | Positive |
| 43 |
| 6b | ATCC 43547 | Not available | Positive |
| 44 |
| 6a | ATCC BAA-680 | Not available | Negativeh |
| 45 |
| ATCC 19119 | Not available | Positive | |
| 46 |
| ATCC 49953 | Not available | Positive | |
| 47 |
| 5 | ATCC BAA-678 | Not available | Positive |
| 48 |
| ATCC BAA-753 | Not available | Positive | |
| 49 |
| ATCC 49954 | Not available | Positive | |
| 50 |
| ATCC 35967 | Not available | Positive | |
| 51 |
| ATCC 51334 | Not available | Positive | |
| 52 |
| 4a | ATCC 51335 | Not available | Negative |
| 53 |
| QL 031011.2 | Creamer | Positive | |
| 54 |
| QL 031011.5 | Frozen vegetables | Positive | |
| 55 |
| Cornell FSL-S4-035 | Not available | Positive | |
| 56 |
| 6b | ATCC 35897 | Not available | Positive |
| 57 |
| 6a | ATCC 43551 | Not available | Negativeh |
| 58 |
| 6a | ATCC 43549 | Not available | Positive |
| 59 |
| 1/2b | ATCC 43550 | Not available | Positive |
| 60 |
| QL 030911-(0).8 | Beef | Positive | |
| 61 |
| UVM LW001 | Not available | Positive |
Serogroup listed if applicable.
American Type Culture Collection, Manassas, VA.
Cornell University, Ithaca, NY.
University of Vermont, Burlington, VA.
Testing done by Q Laboratories.
Q Laboratories, Cincinnati, OH.
National Collection of Type Cultures, Proton Down, Salisbury, UK.
20 h enrichment generated positive result.
PhageDx Listeria exclusivity list
| No. | Species | Source | PhageDx result |
|---|---|---|---|
| 1 |
| ATCC 19606 | Negative |
| 2 |
| ATCC 23055 | Negative |
| 3 |
| ATCC 14579 | Negative |
| 4 |
| ATCC 13061 | Negative |
| 5 |
| ATCC 61 | Negative |
| 6 |
| ATCC 7050 | Negative |
| 7 |
| ATCC 9789 | Negative |
| 8 |
| ATCC 14581 | Negative |
| 9 |
| ATCC 6462 | Negative |
| 10 |
| ATCC 700814 | Negative |
| 11 |
| ATCC 23857 | Negative |
| 12 |
| ATCC 6051 | Negative |
| 13 |
| ATCC 12826 | Negative |
| 14 |
| ATCC 51113 | Negative |
| 15 |
| ATCC 8090 | Negative |
| 16 |
| ATCC 25408 | Negative |
| 17 |
| ATCC 51329 | Negative |
| 18 |
| ATCC 12868 | Negative |
| 19 |
| ATCC 9637 | Negative |
| 20 |
| ATCC 15947 | Negative |
| 21 |
| ATCC 13048 | Negative |
| 22 |
| ATCC 13047 | Negative |
| 23 |
| ATCC BAA-260 | Negative |
| 24 |
| ATCC 19433 | Negative |
| 25 |
| ATCC 29212 | Negative |
| 26 |
| ATCC 19434 | Negative |
| 27 |
| ATCC 700221 | Negative |
| 28 |
| ATCC 35469 | Negative |
| 29 |
| ATCC 33650 | Negative |
| 30 |
| ATCC 13337 | Negative |
| 31 |
| ATCC 43165 | Negative |
| 32 |
| ATCC 4352 | Negative |
| 33 |
| ATCC 14917 | Positive |
| 34 |
| ATCC 7469 | Negative |
| 35 |
| ATCC 25830 | Negative |
| 36 |
| ATCC 33028 | Negative |
| 37 |
| ATCC 43071 | Negative |
| 38 |
| ATCC 33420 | Negative |
| 39 |
| ATCC 27853 | Negative |
| 40 |
| ATCC 13880 | Negative |
| 41 |
| ATCC 12022 | Negative |
| 42 |
| ATCC 9290 | Negative |
| 43 |
| ATCC 27660 | Negative |
| 44 |
| ATCC 14990 | Negative |
| 45 |
| ATCC 29970 | Negative |
| 46 |
| ATCC 19615 | Negative |
| 47 |
| ATCC 23715 | Negative |
American Typle Culture Collection, Manassas, VA.
Testing done by both LabCorp and Q Laboratories.
Testing done by Q Laboratories, Cincinnati, OH.
Stability and consistency (lot-to-lot) of PhageDx Listeria recombinant phage—POD comparison
| Phage lot No. | Lot age, months | N | x | PODA | 95% CI | Phage lot No. | Lot age, months | N | x | PODB | 95% CI | dPODAB | 95% CI |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
| |||||||||||||
| B | 4 | 10 | 4 | 0.4 | 0.17, 0.69 | Ch | 0 | 10 | 6 | 0.6 | 0.31, 0.83 | −0.20 | −0.53, 0.21 |
| Ai | 6 | 10 | 4 | 0.4 | 0.17, 0.69 | C | 0 | 10 | 6 | 0.6 | 0.31, 0.83 | −0.20 | −0.53, 0.21 |
| A | 6 | 10 | 4 | 0.4 | 0.17, 0.69 | B | 4 | 10 | 4 | 0.4 | 0.17, 0.69 | 0.00 | −0.37, 0.37 |
|
| |||||||||||||
| B | 4 | 10 | 0 | 0.0 | 0.0, 0.28 | C | 0 | 10 | 0 | 0.0 | 0.0, 0.28 | 0.0 | −0.28, 0.28 |
| A | 6 | 10 | 0 | 0.0 | 0.0, 0.28 | C | 0 | 10 | 0 | 0.0 | 0.0, 0.28 | 0.0 | −0.28, 0.28 |
| A | 6 | 10 | 0 | 0.0 | 0.0, 0.28 | B | 4 | 10 | 0 | 0.0 | 0.0, 0.28 | 0.0 | −0.28, 0.28 |
N = Number of test portions.
x = Number of positive test portions.
PODA = Positive outcomes divided by the total number of trials first member of pair.
PODB = Positive outcomes divided by the total number of trials second member of pair.
dPODAB = Difference in POD between the paired comparison.
95% CI = If the confidence interval of a dPOD does not contain zero, then the difference is statistically significant at the 5% level.
Lot B was produced 04/20/20.
Lot C was produced 08/20/20.
Lot A was produced 02/20/20.
PhageDx Listeria results: presumptive vs confirmed using the reference method procedure
| Matrix | Strain | CFU/test area | Na | PhageDx | BAM Ch. 10 confirmed |
| 95% CIf | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| xb |
| 95% CI | x |
| 95% CI | ||||||
|
Stainless steel (4 × 4”) |
| N/Ai | 5 | 0 | 0.00 | 0.00, 0.43 | 0 | 0.00 | 0.00, 0.43 | 0.00 | −0.47, 0.47 |
| 48 & 510 | 20 | 8 | 0.40 | 0.22, 0.61 | 8 | 0.40 | 0.22, 0.61 | 0.00 | −0.13, 0.13 | ||
| 160 & 1800 | 5 | 5 | 1.00 | 0.57, 1.00 | 5 | 1.00 | 0.57, 1.00 | 0.00 | −0.47, 0.47 | ||
|
Ceramic (4 × 4”) |
| N/A | 5 | 0 | 0.00 | 0.00, 0.43 | 0 | 0.00 | 0.00, 0.43 | 0.00 | −0.47, 0.47 |
| 60 | 20 | 9 | 0.45 | 0.26, 0.66 | 9 | 0.45 | 0.26, 0.66 | 0.00 | −0.13, 0.13 | ||
| 200 | 5 | 5 | 1.00 | 0.57, 1.00 | 5 | 1.00 | 0.57, 1.00 | 0.00 | −0.47, 0.47 | ||
N = Number of test portions.
x = Number of positive test portions.
PODCP = Candidate method presumptive positive outcomes divided by the total number of trials.
PODCC = Candidate method confirmed positive outcomes (confirmed using the reference method procedure) divided by the total number of trials.
dPODCP = Difference between the candidate method presumptive result and candidate method confirmed result POD values.
95% CI = If the confidence interval of a dPOD does not contain zero, then the difference is statistically significant at the 5% level.
CWD = University of Vermont, Burlington, VT.
ATCC = American Type Culture Collection, Manassas, VA.
N/A = Not applicable.
Method comparison results: PhageDx Listeria vs BAM Ch. 10
| Matrix | Strain | CFU/test area | Na | PhageDx | BAM Ch. 10 |
| 95% CIf | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| xb |
| 95% CI | x |
| 95% CI | ||||||
|
Stainless steel (4 × 4”) |
| N/Ai | 5 | 0 | 0.00 | 0.00, 0.43 | 0 | 0.00 | 0.00, 0.43 | 0.00 | −0.43, 0.43 |
| 48 & 510 | 20 | 8 | 0.40 | 0.22, 0.61 | 8 | 0.40 | 0.22, 0.61 | 0.00 | −0.28, 0.28 | ||
| 160 & 1800 | 5 | 5 | 1.00 | 0.57, 1.00 | 5 | 1.00 | 0.57, 1.00 | 0.00 | −0.43, 0.43 | ||
|
Ceramic (4 × 4”) |
| N/A | 5 | 0 | 0.00 | 0.00, 0.43 | 0 | 0.00 | 0.00, 0.43 | 0.00 | −0.43, 0.43 |
| 60 | 20 | 9 | 0.45 | 0.26, 0.66 | 7 | 0.35 | 0.18, 0.57 | 0.10 | −0.19, 0.37 | ||
| 200 | 5 | 5 | 1.00 | 0.57, 1.00 | 5 | 1.00 | 0.57, 1.00 | 0.00 | −0.43, 0.43 | ||
N = Number of test portions.
x = Number of positive test portions.
PODC = Candidate method presumptive positive outcomes confirmed positive using the reference method procedure.
PODR = Reference method confirmed positive outcomes divided by the total number of trials.
dPODC = Difference between the candidate method and reference method POD values.
95% CI = If the confidence interval of a dPOD does not contain zero, then the difference is statistically significant at the 5% level.
CWD = University of Vermont, Burlington, VT.
ATCC = American Type Culture Collection, Manassas, VA.
N/A = Not applicable.
PhageDx Listeria results: presumptive vs confirmed using the PhageDx Listeria confirmation procedure
| Matrix | Strain | CFU/test area | Na | PhageDx | PhageDx |
| 95% CIf | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| xb |
| 95% CI | x |
| 95% CI | ||||||
|
Stainless steel (4 × 4”) |
| N/Ai | 5 | 0 | 0.00 | 0.00, 0.43 | 0 | 0.00 | 0.00, 0.43 | 0.00 | −0.47, 0.47 |
| 48 & 510 | 20 | 8 | 0.40 | 0.22, 0.61 | 8 | 0.40 | 0.22, 0.61 | 0.00 | −0.13, 0.13 | ||
| 160 & 1800 | 5 | 5 | 1.00 | 0.57, 1.00 | 5 | 1.00 | 0.57, 1.00 | 0.00 | −0.47, 0.47 | ||
|
Ceramic (4 × 4”) | L. innocua (ATCC 43547 6 b) | N/A | 5 | 0 | 0.00 | 0.00, 0.43 | 0 | 0.00 | 0.00, 0.43 | 0.00 | −0.47, 0.47 |
| 60 | 20 | 9 | 0.45 | 0.26, 0.66 | 9 | 0.45 | 0.26, 0.66 | 0.00 | −0.13, 0.13 | ||
| 200 | 5 | 5 | 1.00 | 0.57, 1.00 | 5 | 1.00 | 0.57, 1.00 | 0.00 | −0.47, 0.47 | ||
N = Number of test portions.
x = Number of positive test portions.
PODCP = Candidate method presumptive positive outcomes divided by the total number of trials.
PODCC = Candidate method confirmed positive outcomes (confirmed using the PhageDx Listeria recommended procedure) divided by the total number of trials.
dPODCP = Difference between the candidate method presumptive result and candidate method confirmed result POD values.
95% CI = If the confidence interval of a dPOD does not contain zero, then the difference is statistically significant at the 5% level.
CWD = University of Vermont, Burlington, VT.
ATCC = American Type Culture Collection, Manassas, VA.
N/A = Not applicable.
Method comparison results: PhageDx Listeria vs BAM Ch. 10
| Matrix | Strain | CFU/test area | Na | PhageDx | BAM Ch. 10 |
| 95% CIf | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| xb |
| 95% CI | x |
| 95% CI | ||||||
|
Stainless steel (4 × 4”) |
| N/Ai | 5 | 0 | 0.00 | 0.00, 0.43 | 0 | 0.00 | 0.00, 0.43 | 0.00 | −0.47, 0.47 |
| 48 & 510 | 20 | 8 | 0.40 | 0.22, 0.61 | 8 | 0.40 | 0.22, 0.61 | 0.00 | −0.13, 0.13 | ||
| 160 & 1800 | 5 | 5 | 1.00 | 0.57, 1.00 | 5 | 1.00 | 0.57, 1.00 | 0.00 | −0.47, 0.47 | ||
|
Ceramic (4 × 4”) |
| N/A | 5 | 0 | 0.00 | 0.00, 0.43 | 0 | 0.00 | 0.00, 0.43 | 0.00 | −0.43, 0.43 |
| 60 | 20 | 9 | 0.45 | 0.26, 0.66 | 7 | 0.35 | 0.18, 0.57 | 0.10 | −0.19, 0.37 | ||
| 200 | 5 | 5 | 1.00 | 0.57, 1.00 | 5 | 1.00 | 0.57, 1.00 | 0.00 | −0.43, 0.43 | ||
N = Number of test portions.
x = Number of positive test portions.
PODC = Candidate method presumptive positive outcomes confirmed positive using the PhageDx Listeria recommended procedure.
PODR = Reference method confirmed positive outcomes divided by the total number of trials.
dPODC = Difference between the candidate method and reference method POD values.
95% CI = If the confidence interval of a dPOD does not contain zero, then the difference is statistically significant at the 5% level.
CWD = University of Vermont, Burlington, VT.
ATCC = American Type Culture Collection, Manassas, VA.
N/A = Not applicable.