Literature DB >> 33732718

The Effectiveness of Image Augmentation in Deep Learning Networks for Detecting COVID-19: A Geometric Transformation Perspective.

Mohamed Elgendi1,2,3,4, Muhammad Umer Nasir5, Qunfeng Tang4, David Smith6, John-Paul Grenier6, Catherine Batte7, Bradley Spieler6, William Donald Leslie1, Carlo Menon2,8, Richard Ribbon Fletcher9, Newton Howard3, Rabab Ward4, William Parker5, Savvas Nicolaou5,10.   

Abstract

Chest X-ray imaging technology used for the early detection and screening of COVID-19 pneumonia is both accessible worldwide and affordable compared to other non-invasive technologies. Additionally, deep learning methods have recently shown remarkable results in detecting COVID-19 on chest X-rays, making it a promising screening technology for COVID-19. Deep learning relies on a large amount of data to avoid overfitting. While overfitting can result in perfect modeling on the original training dataset, on a new testing dataset it can fail to achieve high accuracy. In the image processing field, an image augmentation step (i.e., adding more training data) is often used to reduce overfitting on the training dataset, and improve prediction accuracy on the testing dataset. In this paper, we examined the impact of geometric augmentations as implemented in several recent publications for detecting COVID-19. We compared the performance of 17 deep learning algorithms with and without different geometric augmentations. We empirically examined the influence of augmentation with respect to detection accuracy, dataset diversity, augmentation methodology, and network size. Contrary to expectation, our results show that the removal of recently used geometrical augmentation steps actually improved the Matthews correlation coefficient (MCC) of 17 models. The MCC without augmentation (MCC = 0.51) outperformed four recent geometrical augmentations (MCC = 0.47 for Data Augmentation 1, MCC = 0.44 for Data Augmentation 2, MCC = 0.48 for Data Augmentation 3, and MCC = 0.49 for Data Augmentation 4). When we retrained a recently published deep learning without augmentation on the same dataset, the detection accuracy significantly increased, with a χ McNema r ' s statistic 2 = 163 . 2 and a p-value of 2.23 × 10-37. This is an interesting finding that may improve current deep learning algorithms using geometrical augmentations for detecting COVID-19. We also provide clinical perspectives on geometric augmentation to consider regarding the development of a robust COVID-19 X-ray-based detector.
Copyright © 2021 Elgendi, Nasir, Tang, Smith, Grenier, Batte, Spieler, Leslie, Menon, Fletcher, Howard, Ward, Parker and Nicolaou.

Entities:  

Keywords:  artificial intelligence; chest X-ray; corona virus; data augmentation; digital health; machine learning; radiology; transfer learning

Year:  2021        PMID: 33732718      PMCID: PMC7956964          DOI: 10.3389/fmed.2021.629134

Source DB:  PubMed          Journal:  Front Med (Lausanne)        ISSN: 2296-858X


  23 in total

1.  Note on the sampling error of the difference between correlated proportions or percentages.

Authors:  Q McNEMAR
Journal:  Psychometrika       Date:  1947-06       Impact factor: 2.500

2.  COVID-19 identification in chest X-ray images on flat and hierarchical classification scenarios.

Authors:  Rodolfo M Pereira; Diego Bertolini; Lucas O Teixeira; Carlos N Silla; Yandre M G Costa
Journal:  Comput Methods Programs Biomed       Date:  2020-05-08       Impact factor: 5.428

3.  Early triage of critically ill COVID-19 patients using deep learning.

Authors:  Wenhua Liang; Jianhua Yao; Ailan Chen; Qingquan Lv; Mark Zanin; Jun Liu; SookSan Wong; Yimin Li; Jiatao Lu; Hengrui Liang; Guoqiang Chen; Haiyan Guo; Jun Guo; Rong Zhou; Limin Ou; Niyun Zhou; Hanbo Chen; Fan Yang; Xiao Han; Wenjing Huan; Weimin Tang; Weijie Guan; Zisheng Chen; Yi Zhao; Ling Sang; Yuanda Xu; Wei Wang; Shiyue Li; Ligong Lu; Nuofu Zhang; Nanshan Zhong; Junzhou Huang; Jianxing He
Journal:  Nat Commun       Date:  2020-07-15       Impact factor: 14.919

4.  COVIDiagnosis-Net: Deep Bayes-SqueezeNet based diagnosis of the coronavirus disease 2019 (COVID-19) from X-ray images.

Authors:  Ferhat Ucar; Deniz Korkmaz
Journal:  Med Hypotheses       Date:  2020-04-23       Impact factor: 1.538

5.  Automatic classification between COVID-19 pneumonia, non-COVID-19 pneumonia, and the healthy on chest X-ray image: combination of data augmentation methods.

Authors:  Mizuho Nishio; Shunjiro Noguchi; Hidetoshi Matsuo; Takamichi Murakami
Journal:  Sci Rep       Date:  2020-10-16       Impact factor: 4.379

6.  Extracting Possibly Representative COVID-19 Biomarkers from X-ray Images with Deep Learning Approach and Image Data Related to Pulmonary Diseases.

Authors:  Ioannis D Apostolopoulos; Sokratis I Aznaouridis; Mpesiana A Tzani
Journal:  J Med Biol Eng       Date:  2020-05-14       Impact factor: 1.553

7.  Covid-19: automatic detection from X-ray images utilizing transfer learning with convolutional neural networks.

Authors:  Ioannis D Apostolopoulos; Tzani A Mpesiana
Journal:  Phys Eng Sci Med       Date:  2020-04-03

8.  The advantages of the Matthews correlation coefficient (MCC) over F1 score and accuracy in binary classification evaluation.

Authors:  Davide Chicco; Giuseppe Jurman
Journal:  BMC Genomics       Date:  2020-01-02       Impact factor: 3.969

9.  Diagnosis of Coronavirus Disease 2019 Pneumonia by Using Chest Radiography: Value of Artificial Intelligence.

Authors:  Ran Zhang; Xin Tie; Zhihua Qi; Nicholas B Bevins; Chengzhu Zhang; Dalton Griner; Thomas K Song; Jeffrey D Nadig; Mark L Schiebler; John W Garrett; Ke Li; Scott B Reeder; Guang-Hong Chen
Journal:  Radiology       Date:  2020-09-24       Impact factor: 11.105

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Authors:  Mahsa Mansourian; Sadaf Khademi; Hamid Reza Marateb
Journal:  Diagnostics (Basel)       Date:  2021-02-25

2.  Dealing with distribution mismatch in semi-supervised deep learning for COVID-19 detection using chest X-ray images: A novel approach using feature densities.

Authors:  Saul Calderon-Ramirez; Shengxiang Yang; David Elizondo; Armaghan Moemeni
Journal:  Appl Soft Comput       Date:  2022-05-10       Impact factor: 8.263

3.  Deep learning model for the automatic classification of COVID-19 pneumonia, non-COVID-19 pneumonia, and the healthy: a multi-center retrospective study.

Authors:  Mizuho Nishio; Daigo Kobayashi; Eiko Nishioka; Hidetoshi Matsuo; Yasuyo Urase; Koji Onoue; Reiichi Ishikura; Yuri Kitamura; Eiro Sakai; Masaru Tomita; Akihiro Hamanaka; Takamichi Murakami
Journal:  Sci Rep       Date:  2022-05-17       Impact factor: 4.996

4.  Noise Eliminated Ensemble Empirical Mode Decomposition Scalogram Analysis for Rotating Machinery Fault Diagnosis.

Authors:  Atik Faysal; Wai Keng Ngui; Meng Hee Lim; Mohd Salman Leong
Journal:  Sensors (Basel)       Date:  2021-12-04       Impact factor: 3.576

5.  Handling class imbalance in COVID-19 chest X-ray images classification: Using SMOTE and weighted loss.

Authors:  Ekram Chamseddine; Nesrine Mansouri; Makram Soui; Mourad Abed
Journal:  Appl Soft Comput       Date:  2022-08-29       Impact factor: 8.263

6.  A deep learning-based COVID-19 classification from chest X-ray image: case study.

Authors:  G Appasami; S Nickolas
Journal:  Eur Phys J Spec Top       Date:  2022-08-18       Impact factor: 2.891

7.  MNet-10: A robust shallow convolutional neural network model performing ablation study on medical images assessing the effectiveness of applying optimal data augmentation technique.

Authors:  Sidratul Montaha; Sami Azam; A K M Rakibul Haque Rafid; Md Zahid Hasan; Asif Karim; Khan Md Hasib; Shobhit K Patel; Mirjam Jonkman; Zubaer Ibna Mannan
Journal:  Front Med (Lausanne)       Date:  2022-08-16
  7 in total

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