Literature DB >> 33732166

The Cranial Neural Crest in a Multiomics Era.

Vanessa Chong-Morrison1, Tatjana Sauka-Spengler1.   

Abstract

Neural crest ontogeny plays a prominent role in craniofacial development. In this Perspective article, we discuss recent advances to the understanding of mechanisms underlying the cranial neural crest gene regulatory network (cNC-GRN) stemming from omics-based studies. We briefly summarize how parallel considerations of transcriptome, interactome, and epigenome data significantly elaborated the roles of key players derived from pre-omics era studies. Furthermore, the growing cohort of cNC multiomics data revealed contribution of the non-coding genomic landscape. As technological improvements are constantly being developed, we reflect on key questions we are poised to address by taking advantage of the unique perspective a multiomics approach has to offer.
Copyright © 2021 Chong-Morrison and Sauka-Spengler.

Entities:  

Keywords:  epigenome; gene regulatory network; interactome; multiomics; neural crest; non-coding; transcriptome

Year:  2021        PMID: 33732166      PMCID: PMC7956944          DOI: 10.3389/fphys.2021.634440

Source DB:  PubMed          Journal:  Front Physiol        ISSN: 1664-042X            Impact factor:   4.566


  86 in total

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Review 2.  MicroRNAs and the neural crest: From induction to differentiation.

Authors:  Andrea M J Weiner
Journal:  Mech Dev       Date:  2018-05-31       Impact factor: 1.882

3.  eRNAs are required for p53-dependent enhancer activity and gene transcription.

Authors:  Carlos A Melo; Jarno Drost; Patrick J Wijchers; Harmen van de Werken; Elzo de Wit; Joachim A F Oude Vrielink; Ran Elkon; Sónia A Melo; Nicolas Léveillé; Raghu Kalluri; Wouter de Laat; Reuven Agami
Journal:  Mol Cell       Date:  2012-12-27       Impact factor: 17.970

4.  Overexpression of the transcriptional repressor FoxD3 prevents neural crest formation in Xenopus embryos.

Authors:  B S Pohl; W Knöchel
Journal:  Mech Dev       Date:  2001-05       Impact factor: 1.882

5.  Remodeling of the enhancer landscape during macrophage activation is coupled to enhancer transcription.

Authors:  Minna U Kaikkonen; Nathanael J Spann; Sven Heinz; Casey E Romanoski; Karmel A Allison; Joshua D Stender; Hyun B Chun; David F Tough; Rab K Prinjha; Christopher Benner; Christopher K Glass
Journal:  Mol Cell       Date:  2013-08-08       Impact factor: 17.970

6.  A simple method for gene expression and chromatin profiling of individual cell types within a tissue.

Authors:  Roger B Deal; Steven Henikoff
Journal:  Dev Cell       Date:  2010-06-15       Impact factor: 12.270

Review 7.  Sorting out Sox10 functions in neural crest development.

Authors:  Robert N Kelsh
Journal:  Bioessays       Date:  2006-08       Impact factor: 4.345

8.  Transcriptome profiling reveals expression signatures of cranial neural crest cells arising from different axial levels.

Authors:  Rachael Lumb; Sam Buckberry; Genevieve Secker; David Lawrence; Quenten Schwarz
Journal:  BMC Dev Biol       Date:  2017-04-13       Impact factor: 1.978

9.  A genome-wide assessment of the ancestral neural crest gene regulatory network.

Authors:  Dorit Hockman; Vanessa Chong-Morrison; Stephen A Green; Daria Gavriouchkina; Ivan Candido-Ferreira; Irving T C Ling; Ruth M Williams; Chris T Amemiya; Jeramiah J Smith; Marianne E Bronner; Tatjana Sauka-Spengler
Journal:  Nat Commun       Date:  2019-10-16       Impact factor: 14.919

10.  Early chromatin shaping predetermines multipotent vagal neural crest into neural, neuronal and mesenchymal lineages.

Authors:  Irving T C Ling; Tatjana Sauka-Spengler
Journal:  Nat Cell Biol       Date:  2019-12-02       Impact factor: 28.824

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  5 in total

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Journal:  Stem Cell Rev Rep       Date:  2022-06-21       Impact factor: 5.739

2.  Investigating chromatin accessibility during development and differentiation by ATAC-sequencing to guide the identification of cis-regulatory elements.

Authors:  Emily Louise Smith; Gi Fay Mok; Andrea Münsterberg
Journal:  Biochem Soc Trans       Date:  2022-06-30       Impact factor: 4.919

3.  Function of chromatin modifier Hmgn1 during neural crest and craniofacial development.

Authors:  Chibuike Ihewulezi; Jean-Pierre Saint-Jeannet
Journal:  Genesis       Date:  2021-09-03       Impact factor: 2.389

4.  Tfap2b specifies an embryonic melanocyte stem cell that retains adult multifate potential.

Authors:  Alessandro Brombin; Daniel J Simpson; Jana Travnickova; Hannah Brunsdon; Zhiqiang Zeng; Yuting Lu; Adelaide I J Young; Tamir Chandra; E Elizabeth Patton
Journal:  Cell Rep       Date:  2022-01-11       Impact factor: 9.423

Review 5.  Cell Fate Decisions in the Neural Crest, from Pigment Cell to Neural Development.

Authors:  Jonathan H P Dawes; Robert N Kelsh
Journal:  Int J Mol Sci       Date:  2021-12-16       Impact factor: 5.923

  5 in total

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