Literature DB >> 33731974

An evaluation of machine learning techniques to predict the outcome of children treated for Hodgkin-Lymphoma on the AHOD0031 trial: A report from the Children's Oncology Group.

Cédric Beaulac1, Jeffrey S Rosenthal1, Qinglin Pei2, Debra Friedman3, Suzanne Wolden4, David Hodgson5.   

Abstract

In this manuscript we analyze a data set containing information on children with Hodgkin Lymphoma (HL) enrolled on a clinical trial. Treatments received and survival status were collected together with other covariates such as demographics and clinical measurements. Our main task is to explore the potential of machine learning (ML) algorithms in a survival analysis context in order to improve over the Cox Proportional Hazard (CoxPH) model. We discuss the weaknesses of the CoxPH model we would like to improve upon and then we introduce multiple algorithms, from well-established ones to state-of-the-art models, that solve these issues. We then compare every model according to the concordance index and the brier score. Finally, we produce a series of recommendations, based on our experience, for practitioners that would like to benefit from the recent advances in artificial intelligence.

Entities:  

Keywords:  Cox proportional hazard; case study; machine learning; neural networks; survival analysis; survival trees; variational auto-encoders

Year:  2020        PMID: 33731974      PMCID: PMC7963212          DOI: 10.1080/08839514.2020.1815151

Source DB:  PubMed          Journal:  Appl Artif Intell        ISSN: 0883-9514            Impact factor:   1.580


  17 in total

1.  Survival ensembles.

Authors:  Torsten Hothorn; Peter Bühlmann; Sandrine Dudoit; Annette Molinaro; Mark J van der Laan
Journal:  Biostatistics       Date:  2005-12-12       Impact factor: 5.899

2.  Relative risk trees for censored survival data.

Authors:  M LeBlanc; J Crowley
Journal:  Biometrics       Date:  1992-06       Impact factor: 2.571

Review 3.  Multivariable prognostic models: issues in developing models, evaluating assumptions and adequacy, and measuring and reducing errors.

Authors:  F E Harrell; K L Lee; D B Mark
Journal:  Stat Med       Date:  1996-02-28       Impact factor: 2.373

4.  A systematic review shows no performance benefit of machine learning over logistic regression for clinical prediction models.

Authors:  Evangelia Christodoulou; Jie Ma; Gary S Collins; Ewout W Steyerberg; Jan Y Verbakel; Ben Van Calster
Journal:  J Clin Epidemiol       Date:  2019-02-11       Impact factor: 6.437

5.  Dose-intensive response-based chemotherapy and radiation therapy for children and adolescents with newly diagnosed intermediate-risk hodgkin lymphoma: a report from the Children's Oncology Group Study AHOD0031.

Authors:  Debra L Friedman; Lu Chen; Suzanne Wolden; Allen Buxton; Kathleen McCarten; Thomas J FitzGerald; Sandra Kessel; Pedro A De Alarcon; Allen R Chen; Nathan Kobrinsky; Peter Ehrlich; Robert E Hutchison; Louis S Constine; Cindy L Schwartz
Journal:  J Clin Oncol       Date:  2014-10-13       Impact factor: 44.544

6.  Regularization Paths for Generalized Linear Models via Coordinate Descent.

Authors:  Jerome Friedman; Trevor Hastie; Rob Tibshirani
Journal:  J Stat Softw       Date:  2010       Impact factor: 6.440

7.  Detection of Breast Cancer with Mammography: Effect of an Artificial Intelligence Support System.

Authors:  Alejandro Rodríguez-Ruiz; Elizabeth Krupinski; Jan-Jurre Mordang; Kathy Schilling; Sylvia H Heywang-Köbrunner; Ioannis Sechopoulos; Ritse M Mann
Journal:  Radiology       Date:  2018-11-20       Impact factor: 11.105

8.  Regularization Paths for Cox's Proportional Hazards Model via Coordinate Descent.

Authors:  Noah Simon; Jerome Friedman; Trevor Hastie; Rob Tibshirani
Journal:  J Stat Softw       Date:  2011-03       Impact factor: 6.440

9.  Assessment of performance of survival prediction models for cancer prognosis.

Authors:  Hung-Chia Chen; Ralph L Kodell; Kuang Fu Cheng; James J Chen
Journal:  BMC Med Res Methodol       Date:  2012-07-23       Impact factor: 4.615

10.  DeepSurv: personalized treatment recommender system using a Cox proportional hazards deep neural network.

Authors:  Jared L Katzman; Uri Shaham; Alexander Cloninger; Jonathan Bates; Tingting Jiang; Yuval Kluger
Journal:  BMC Med Res Methodol       Date:  2018-02-26       Impact factor: 4.615

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  1 in total

1.  Translational Applications of Artificial Intelligence and Machine Learning for Diagnostic Pathology in Lymphoid Neoplasms: A Comprehensive and Evolutive Analysis.

Authors:  Julia Moran-Sanchez; Antonio Santisteban-Espejo; Miguel Angel Martin-Piedra; Jose Perez-Requena; Marcial Garcia-Rojo
Journal:  Biomolecules       Date:  2021-05-25
  1 in total

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