Literature DB >> 33727595

Characterization of microbial antifreeze protein with intermediate activity suggests that a bound-water network is essential for hyperactivity.

N M-Mofiz Uddin Khan1,2, Tatsuya Arai1, Sakae Tsuda1,3,4, Hidemasa Kondo5,6.   

Abstract

Antifreeze proteins (AFPs) inhibit ice growth by adsorbing onto specific ice planes. Microbial AFPs show diverse antifreeze activity and ice plane specificity, while sharing a common molecular scaffold. To probe the molecular mechanisms responsible for AFP activity, we here characterized the antifreeze activity and crystal structure of TisAFP7 from the snow mold fungus Typhula ishikariensis. TisAFP7 exhibited intermediate activity, with the ability to bind the basal plane, compared with a hyperactive isoform TisAFP8 and a moderately active isoform TisAFP6. Analysis of the TisAFP7 crystal structure revealed a bound-water network arranged in a zigzag pattern on the surface of the protein's ice-binding site (IBS). While the three AFP isoforms shared the water network pattern, the network on TisAFP7 IBS was not extensive, which was likely related to its intermediate activity. Analysis of the TisAFP7 crystal structure also revealed the presence of additional water molecules that form a ring-like network surrounding the hydrophobic side chain of a crucial IBS phenylalanine, which might be responsible for the increased adsorption of AFP molecule onto the basal plane. Based on these observations, we propose that the extended water network and hydrophobic hydration at IBS together determine the TisAFP activity.

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Year:  2021        PMID: 33727595      PMCID: PMC7966756          DOI: 10.1038/s41598-021-85559-x

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  57 in total

1.  UCSF Chimera--a visualization system for exploratory research and analysis.

Authors:  Eric F Pettersen; Thomas D Goddard; Conrad C Huang; Gregory S Couch; Daniel M Greenblatt; Elaine C Meng; Thomas E Ferrin
Journal:  J Comput Chem       Date:  2004-10       Impact factor: 3.376

2.  The basis for hyperactivity of antifreeze proteins.

Authors:  Andrew J Scotter; Christopher B Marshall; Laurie A Graham; Jack A Gilbert; Christopher P Garnham; Peter L Davies
Journal:  Cryobiology       Date:  2006-08-02       Impact factor: 2.487

3.  Free R value: a novel statistical quantity for assessing the accuracy of crystal structures.

Authors:  A T Brünger
Journal:  Nature       Date:  1992-01-30       Impact factor: 49.962

4.  Anchored clathrate waters bind antifreeze proteins to ice.

Authors:  Christopher P Garnham; Robert L Campbell; Peter L Davies
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-11       Impact factor: 11.205

5.  Antifreeze proteins bind independently to ice.

Authors:  C I DeLuca; R Comley; P L Davies
Journal:  Biophys J       Date:  1998-03       Impact factor: 4.033

Review 6.  Ice-Binding Proteins and Their Function.

Authors:  Maya Bar Dolev; Ido Braslavsky; Peter L Davies
Journal:  Annu Rev Biochem       Date:  2016-04-25       Impact factor: 23.643

7.  Cryo-protective effect of an ice-binding protein derived from Antarctic bacteria.

Authors:  Marco Mangiagalli; Maya Bar-Dolev; Pietro Tedesco; Antonino Natalello; Aleksei Kaleda; Stefania Brocca; Donatella de Pascale; Sandra Pucciarelli; Cristina Miceli; Ido Braslavsky; Marina Lotti
Journal:  FEBS J       Date:  2016-12-26       Impact factor: 5.542

Review 8.  Biochemistry of fish antifreeze proteins.

Authors:  P L Davies; C L Hew
Journal:  FASEB J       Date:  1990-05       Impact factor: 5.191

9.  Isolation, characterization, and physical properties of protein antifreezes from the winter flounder, Pseudopleuronectes americanus.

Authors:  J G Duman; A L de Vries
Journal:  Comp Biochem Physiol B       Date:  1976

10.  Overview of the CCP4 suite and current developments.

Authors:  Martyn D Winn; Charles C Ballard; Kevin D Cowtan; Eleanor J Dodson; Paul Emsley; Phil R Evans; Ronan M Keegan; Eugene B Krissinel; Andrew G W Leslie; Airlie McCoy; Stuart J McNicholas; Garib N Murshudov; Navraj S Pannu; Elizabeth A Potterton; Harold R Powell; Randy J Read; Alexei Vagin; Keith S Wilson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18
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  5 in total

Review 1.  Effect of antifreeze proteins on the freeze-thaw cycle of foods: fundamentals, mechanisms of action, current challenges and recommendations for future work.

Authors:  Vicente Amirpasha Tirado-Kulieva; William Rolando Miranda-Zamora; Ernesto Hernández-Martínez; Lucia Ruth Pantoja-Tirado; Delicia Liliana Bazán-Tantaleán; Ever William Camacho-Orbegoso
Journal:  Heliyon       Date:  2022-10-07

Review 2.  Antifreeze Proteins: Novel Applications and Navigation towards Their Clinical Application in Cryobanking.

Authors:  Marlene Davis Ekpo; Jingxian Xie; Yuying Hu; Xiangjian Liu; Fenglin Liu; Jia Xiang; Rui Zhao; Bo Wang; Songwen Tan
Journal:  Int J Mol Sci       Date:  2022-02-27       Impact factor: 5.923

3.  Adsorption of ice-binding proteins onto whole ice crystal surfaces does not necessarily confer a high thermal hysteresis activity.

Authors:  Tatsuya Arai; Akari Yamauchi; Yue Yang; Shiv Mohan Singh; Yuji C Sasaki; Sakae Tsuda
Journal:  Sci Rep       Date:  2022-09-14       Impact factor: 4.996

Review 4.  Cold Adaptation Strategies and the Potential of Psychrophilic Enzymes from the Antarctic Yeast, Glaciozyma antarctica PI12.

Authors:  Nur Athirah Yusof; Noor Haza Fazlin Hashim; Izwan Bharudin
Journal:  J Fungi (Basel)       Date:  2021-06-30

Review 5.  Psychrophilic Bacterial Phosphate-Biofertilizers: A Novel Extremophile for Sustainable Crop Production under Cold Environment.

Authors:  Asfa Rizvi; Bilal Ahmed; Mohammad Saghir Khan; Shahid Umar; Jintae Lee
Journal:  Microorganisms       Date:  2021-11-28
  5 in total

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