Literature DB >> 33727571

Genomics and Transcriptomics of the green mussel explain the durability of its byssus.

Koji Inoue1, Yuki Yoshioka2,3, Hiroyuki Tanaka4, Azusa Kinjo2, Mieko Sassa2,3, Ikuo Ueda5,6, Chuya Shinzato2, Atsushi Toyoda7, Takehiko Itoh4.   

Abstract

Mussels, which occupy important positions in marine ecosystems, attach tightly to underwater substrates using a proteinaceous holdfast known as the byssus, which is tough, durable, and resistant to enzymatic degradation. Although various byssal proteins have been identified, the mechanisms by which it achieves such durability are unknown. Here we report comprehensive identification of genes involved in byssus formation through whole-genome and foot-specific transcriptomic analyses of the green mussel, Perna viridis. Interestingly, proteins encoded by highly expressed genes include proteinase inhibitors and defense proteins, including lysozyme and lectins, in addition to structural proteins and protein modification enzymes that probably catalyze polymerization and insolubilization. This assemblage of structural and protective molecules constitutes a multi-pronged strategy to render the byssus highly resistant to environmental insults.

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Year:  2021        PMID: 33727571      PMCID: PMC7971044          DOI: 10.1038/s41598-021-84948-6

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  56 in total

1.  Direct mapping and alignment of protein sequences onto genomic sequence.

Authors:  Osamu Gotoh
Journal:  Bioinformatics       Date:  2008-08-26       Impact factor: 6.937

2.  Accelerating the design of biomimetic materials by integrating RNA-seq with proteomics and materials science.

Authors:  Paul A Guerette; Shawn Hoon; Yiqi Seow; Manfred Raida; Admir Masic; Fong T Wong; Vincent H B Ho; Kiat Whye Kong; Melik C Demirel; Abdon Pena-Francesch; Shahrouz Amini; Gavin Z Tay; Dawei Ding; Ali Miserez
Journal:  Nat Biotechnol       Date:  2013-09-08       Impact factor: 54.908

3.  A mitochondrial genome phylogeny of Mytilidae (Bivalvia: Mytilida).

Authors:  Yucheol Lee; Haena Kwak; Jinkyung Shin; Seung-Chul Kim; Taeho Kim; Joong-Ki Park
Journal:  Mol Phylogenet Evol       Date:  2019-06-08       Impact factor: 4.286

4.  GMAP: a genomic mapping and alignment program for mRNA and EST sequences.

Authors:  Thomas D Wu; Colin K Watanabe
Journal:  Bioinformatics       Date:  2005-02-22       Impact factor: 6.937

5.  Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes.

Authors:  Jin Sun; Yu Zhang; Ting Xu; Yang Zhang; Huawei Mu; Yanjie Zhang; Yi Lan; Christopher J Fields; Jerome Ho Lam Hui; Weipeng Zhang; Runsheng Li; Wenyan Nong; Fiona Ka Man Cheung; Jian-Wen Qiu; Pei-Yuan Qian
Journal:  Nat Ecol Evol       Date:  2017-04-03       Impact factor: 15.460

6.  A molecular phylogeny of the marine mussel genus Perna (Bivalvia: Mytilidae) based on nuclear (ITS1&2) and mitochondrial (COI) DNA sequences.

Authors:  Ann R Wood; Smita Apte; Elizabeth S MacAvoy; Jonathan P A Gardner
Journal:  Mol Phylogenet Evol       Date:  2006-12-31       Impact factor: 4.286

Review 7.  Mussel adhesion - essential footwork.

Authors:  J Herbert Waite
Journal:  J Exp Biol       Date:  2017-02-15       Impact factor: 3.312

8.  Assessing the relationship between the abundance and properties of microplastics in water and in mussels.

Authors:  Xiaoyun Qu; Lei Su; Hengxiang Li; Mingzhong Liang; Huahong Shi
Journal:  Sci Total Environ       Date:  2017-12-01       Impact factor: 7.963

9.  Proteinortho: detection of (co-)orthologs in large-scale analysis.

Authors:  Marcus Lechner; Sven Findeiss; Lydia Steiner; Manja Marz; Peter F Stadler; Sonja J Prohaska
Journal:  BMC Bioinformatics       Date:  2011-04-28       Impact factor: 3.169

10.  RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.

Authors:  Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2014-01-21       Impact factor: 6.937

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  2 in total

1.  Decoding the byssus fabrication by spatiotemporal secretome analysis of scallop foot.

Authors:  Xiaoting Dai; Xuan Zhu; Lisui Bao; Xiaomei Chen; Yan Miao; Yangping Li; Yuli Li; Jia Lv; Lingling Zhang; Xiaoting Huang; Zhenmin Bao; Shi Wang; Jing Wang
Journal:  Comput Struct Biotechnol J       Date:  2022-05-27       Impact factor: 6.155

2.  The genome of the zebra mussel, Dreissena polymorpha: a resource for comparative genomics, invasion genetics, and biocontrol.

Authors:  Michael A McCartney; Benjamin Auch; Thomas Kono; Sophie Mallez; Ying Zhang; Angelico Obille; Aaron Becker; Juan E Abrahante; John Garbe; Jonathan P Badalamenti; Adam Herman; Hayley Mangelson; Ivan Liachko; Shawn Sullivan; Eli D Sone; Sergey Koren; Kevin A T Silverstein; Kenneth B Beckman; Daryl M Gohl
Journal:  G3 (Bethesda)       Date:  2022-02-04       Impact factor: 3.542

  2 in total

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