Literature DB >> 33725650

Harnessing the power of directed evolution to improve genome editing systems.

Qiwen Su1, Mi Zhou1, Cristina Cheng1, Jia Niu2.   

Abstract

The recent development of genome editing systems, such as zinc-finger nucleases, transcription activator-like effectors, CRISPR-Cas nucleases, and base editors has enabled the unprecedented capability to engineer the genomes of living cells. The ever-increasing demand for genome editors with improved accuracy, activity, and functionality has stimulated significant efforts to further engineer the genome editing systems. Directed evolution represents a promising strategy to improve the existing genome editing systems and enable new editing functions. Here, we review recent representative strategies to harness the power of directed evolution to improve genome editing systems, which have led to state-of-the-art genome editors that have significant implications for diverse applications in both laboratories and clinics.
Copyright © 2021 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Base editor; CRISPR; Directed evolution; Genome editors; Synthetic biology

Mesh:

Year:  2021        PMID: 33725650      PMCID: PMC8435539          DOI: 10.1016/j.cbpa.2021.02.004

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.972


  56 in total

Review 1.  Genome editing with engineered zinc finger nucleases.

Authors:  Fyodor D Urnov; Edward J Rebar; Michael C Holmes; H Steve Zhang; Philip D Gregory
Journal:  Nat Rev Genet       Date:  2010-09       Impact factor: 53.242

2.  Enhancing zinc-finger-nuclease activity with improved obligate heterodimeric architectures.

Authors:  Yannick Doyon; Thuy D Vo; Matthew C Mendel; Shon G Greenberg; Jianbin Wang; Danny F Xia; Jeffrey C Miller; Fyodor D Urnov; Philip D Gregory; Michael C Holmes
Journal:  Nat Methods       Date:  2010-12-05       Impact factor: 28.547

3.  Creating a TALE protein with unbiased 5'-T binding.

Authors:  Shogo Tsuji; Shiroh Futaki; Miki Imanishi
Journal:  Biochem Biophys Res Commun       Date:  2013-10-19       Impact factor: 3.575

4.  SunnyTALEN: a second-generation TALEN system for human genome editing.

Authors:  Ning Sun; Zehua Bao; Xiong Xiong; Huimin Zhao
Journal:  Biotechnol Bioeng       Date:  2013-12-11       Impact factor: 4.530

5.  A zinc finger directory for high-affinity DNA recognition.

Authors:  A C Jamieson; H Wang; S H Kim
Journal:  Proc Natl Acad Sci U S A       Date:  1996-11-12       Impact factor: 11.205

6.  In vitro selection of zinc fingers with altered DNA-binding specificity.

Authors:  A C Jamieson; S H Kim; J A Wells
Journal:  Biochemistry       Date:  1994-05-17       Impact factor: 3.162

7.  Selection-free zinc-finger-nuclease engineering by context-dependent assembly (CoDA).

Authors:  Jeffry D Sander; Elizabeth J Dahlborg; Mathew J Goodwin; Lindsay Cade; Feng Zhang; Daniel Cifuentes; Shaun J Curtin; Jessica S Blackburn; Stacey Thibodeau-Beganny; Yiping Qi; Christopher J Pierick; Ellen Hoffman; Morgan L Maeder; Cyd Khayter; Deepak Reyon; Drena Dobbs; David M Langenau; Robert M Stupar; Antonio J Giraldez; Daniel F Voytas; Randall T Peterson; Jing-Ruey J Yeh; J Keith Joung
Journal:  Nat Methods       Date:  2010-12-12       Impact factor: 28.547

8.  A system for the continuous directed evolution of biomolecules.

Authors:  Kevin M Esvelt; Jacob C Carlson; David R Liu
Journal:  Nature       Date:  2011-04-10       Impact factor: 49.962

9.  Programmable base editing of A•T to G•C in genomic DNA without DNA cleavage.

Authors:  Nicole M Gaudelli; Alexis C Komor; Holly A Rees; Michael S Packer; Ahmed H Badran; David I Bryson; David R Liu
Journal:  Nature       Date:  2017-10-25       Impact factor: 49.962

10.  Evolved Cas9 variants with broad PAM compatibility and high DNA specificity.

Authors:  Johnny H Hu; Shannon M Miller; Maarten H Geurts; Weixin Tang; Liwei Chen; Ning Sun; Christina M Zeina; Xue Gao; Holly A Rees; Zhi Lin; David R Liu
Journal:  Nature       Date:  2018-02-28       Impact factor: 49.962

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  1 in total

Review 1.  CRISPR/Cas12a-based technology: A powerful tool for biosensing in food safety.

Authors:  Zefeng Mao; Ruipeng Chen; Xiaojuan Wang; Zixuan Zhou; Yuan Peng; Shuang Li; Dianpeng Han; Sen Li; Yu Wang; Tie Han; Jun Liang; Shuyue Ren; Zhixian Gao
Journal:  Trends Food Sci Technol       Date:  2022-03-01       Impact factor: 12.563

  1 in total

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