Literature DB >> 33725579

An imageomics and multi-network based deep learning model for risk assessment of liver transplantation for hepatocellular cancer.

Tiancheng He1, Joy Nolte Fong2, Linda W Moore3, Chika F Ezeana1, David Victor4, Mukul Divatia5, Matthew Vasquez1, R Mark Ghobrial6, Stephen T C Wong7.   

Abstract

INTRODUCTION: Liver transplantation (LT) is an effective treatment for hepatocellular carcinoma (HCC), the most common type of primary liver cancer. Patients with small HCC (<5 cm) are given priority over others for transplantation due to clinical allocation policies based on tumor size. Attempting to shift from the prevalent paradigm that successful transplantation and longer disease-free survival can only be achieved in patients with small HCC to expanding the transplantation option to patients with HCC of the highest tumor burden (>5 cm), we developed a convergent artificial intelligence (AI) model that combines transient clinical data with quantitative histologic and radiomic features for more objective risk assessment of liver transplantation for HCC patients.
METHODS: Patients who received a LT for HCC between 2008-2019 were eligible for inclusion in the analysis. All patients with post-LT recurrence were included, and those without recurrence were randomly selected for inclusion in the deep learning model. Pre- and post-transplant magnetic resonance imaging (MRI) scans and reports were compressed using CapsNet networks and natural language processing, respectively, as input for a multiple feature radial basis function network. We applied a histological image analysis algorithm to detect pathologic areas of interest from explant tissue of patients who recurred. The multilayer perceptron was designed as a feed-forward, supervised neural network topology, with the final assessment of recurrence risk. We used area under the curve (AUC) and F-1 score to assess the predictability of different network combinations.
RESULTS: A total of 109 patients were included (87 in the training group, 22 in the testing group), of which 20 were positive for cancer recurrence. Seven models (AUC; F-1 score) were generated, including clinical features only (0.55; 0.52), magnetic resonance imaging (MRI) only (0.64; 0.61), pathological images only (0.64; 0.61), MRI plus pathology (0.68; 0.65), MRI plus clinical (0.78, 0.75), pathology plus clinical (0.77; 0.73), and a combination of clinical, MRI, and pathology features (0.87; 0.84). The final combined model showed 80 % recall and 89 % precision. The total accuracy of the implemented model was 82 %.
CONCLUSION: We validated that the deep learning model combining clinical features and multi-scale histopathologic and radiomic image features can be used to discover risk factors for recurrence beyond tumor size and biomarker analysis. Such a predictive, convergent AI model has the potential to alter the LT allocation system for HCC patients and expand the transplantation treatment option to patients with HCC of the highest tumor burden.
Copyright © 2021 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Deep learning; Hepatocellular carcinoma; Liver transplantation; Recurrence risk

Mesh:

Year:  2021        PMID: 33725579      PMCID: PMC8054468          DOI: 10.1016/j.compmedimag.2021.101894

Source DB:  PubMed          Journal:  Comput Med Imaging Graph        ISSN: 0895-6111            Impact factor:   4.790


  34 in total

1.  Outcomes of Liver Transplantation for Hepatocellular Carcinoma Beyond the University of California San Francisco Criteria: A Single-center Experience.

Authors:  David W Victor; Howard P Monsour; Maha Boktour; Keri Lunsford; Julius Balogh; Edward A Graviss; Duc T Nguyen; Robert McFadden; Mukul K Divatia; Kirk Heyne; Victor Ankoma-Sey; Chukwuma Egwim; Joseph Galati; Andrea Duchini; Ashish Saharia; Constance Mobley; A Osama Gaber; R Mark Ghobrial
Journal:  Transplantation       Date:  2020-01       Impact factor: 4.939

2.  Automatic segmentation of liver tumors from multiphase contrast-enhanced CT images based on FCNs.

Authors:  Changjian Sun; Shuxu Guo; Huimao Zhang; Jing Li; Meimei Chen; Shuzhi Ma; Lanyi Jin; Xiaoming Liu; Xueyan Li; Xiaohua Qian
Journal:  Artif Intell Med       Date:  2017-03-27       Impact factor: 5.326

3.  A Deep Learning-Based Decision Support Tool for Precision Risk Assessment of Breast Cancer.

Authors:  Tiancheng He; Mamta Puppala; Chika F Ezeana; Yan-Siang Huang; Ping-Hsuan Chou; Xiaohui Yu; Shenyi Chen; Lin Wang; Zheng Yin; Rebecca L Danforth; Joe Ensor; Jenny Chang; Tejal Patel; Stephen T C Wong
Journal:  JCO Clin Cancer Inform       Date:  2019-05

4.  OPTN/SRTR 2017 Annual Data Report: Liver.

Authors:  W R Kim; J R Lake; J M Smith; D P Schladt; M A Skeans; S M Noreen; A M Robinson; E Miller; J J Snyder; A K Israni; B L Kasiske
Journal:  Am J Transplant       Date:  2019-02       Impact factor: 8.086

5.  Liver transplantation for hepatocellular carcinoma: expansion of the tumor size limits does not adversely impact survival.

Authors:  F Y Yao; L Ferrell; N M Bass; J J Watson; P Bacchetti; A Venook; N L Ascher; J P Roberts
Journal:  Hepatology       Date:  2001-06       Impact factor: 17.425

6.  Development and Validation of a Deep Learning System for Staging Liver Fibrosis by Using Contrast Agent-enhanced CT Images in the Liver.

Authors:  Kyu Jin Choi; Jong Keon Jang; Seung Soo Lee; Yu Sub Sung; Woo Hyun Shim; Ho Sung Kim; Jessica Yun; Jin-Young Choi; Yedaun Lee; Bo-Kyeong Kang; Jin Hee Kim; So Yeon Kim; Eun Sil Yu
Journal:  Radiology       Date:  2018-09-04       Impact factor: 11.105

7.  Liver transplantation for the treatment of small hepatocellular carcinomas in patients with cirrhosis.

Authors:  V Mazzaferro; E Regalia; R Doci; S Andreola; A Pulvirenti; F Bozzetti; F Montalto; M Ammatuna; A Morabito; L Gennari
Journal:  N Engl J Med       Date:  1996-03-14       Impact factor: 176.079

8.  Radiomics: Images Are More than Pictures, They Are Data.

Authors:  Robert J Gillies; Paul E Kinahan; Hedvig Hricak
Journal:  Radiology       Date:  2015-11-18       Impact factor: 11.105

Review 9.  Aptamer: A potential oligonucleotide nanomedicine in the diagnosis and treatment of hepatocellular carcinoma.

Authors:  Rusdina Bte Ladju; Devis Pascut; Muhammad Nasrum Massi; Claudio Tiribelli; Caecilia H C Sukowati
Journal:  Oncotarget       Date:  2017-12-16

10.  Automatic liver tumor segmentation in CT with fully convolutional neural networks and object-based postprocessing.

Authors:  Grzegorz Chlebus; Andrea Schenk; Jan Hendrik Moltz; Bram van Ginneken; Horst Karl Hahn; Hans Meine
Journal:  Sci Rep       Date:  2018-10-19       Impact factor: 4.379

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  5 in total

Review 1.  Multimodal deep learning for biomedical data fusion: a review.

Authors:  Sören Richard Stahlschmidt; Benjamin Ulfenborg; Jane Synnergren
Journal:  Brief Bioinform       Date:  2022-03-10       Impact factor: 11.622

Review 2.  A Survey on Deep Learning for Precision Oncology.

Authors:  Ching-Wei Wang; Muhammad-Adil Khalil; Nabila Puspita Firdi
Journal:  Diagnostics (Basel)       Date:  2022-06-17

Review 3.  Artificial intelligence in liver diseases: Improving diagnostics, prognostics and response prediction.

Authors:  David Nam; Julius Chapiro; Valerie Paradis; Tobias Paul Seraphin; Jakob Nikolas Kather
Journal:  JHEP Rep       Date:  2022-02-02

Review 4.  Recent Progress and Future Direction for the Application of Multiomics Data in Clinical Liver Transplantation.

Authors:  Zhengtao Liu; Jun Xu; Shuping Que; Lei Geng; Lin Zhou; Adil Mardinoglu; Shusen Zheng
Journal:  J Clin Transl Hepatol       Date:  2022-01-04

5.  Multiradiographic Diagnosis of Primary Hepatocellular Carcinoma and Evaluation of Its Postoperative Observation after Interventional Treatment.

Authors:  Ning Tang; Jing Zhu; Ying Zeng; Xiao Zhang; Jian Zhou
Journal:  Contrast Media Mol Imaging       Date:  2022-08-04       Impact factor: 3.009

  5 in total

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