Literature DB >> 33723218

Predicting alcohol use disorder remission: a longitudinal multimodal multi-featured machine learning approach.

Sivan Kinreich1, Vivia V McCutcheon2, Fazil Aliev3,4, Jacquelyn L Meyers5, Chella Kamarajan5, Ashwini K Pandey5, David B Chorlian5, Jian Zhang5, Weipeng Kuang5, Gayathri Pandey5, Stacey Subbie-Saenz de Viteri5, Meredith W Francis6, Grace Chan7, Jessica L Bourdon2, Danielle M Dick3, Andrey P Anokhin2, Lance Bauer7, Victor Hesselbrock7, Marc A Schuckit8, John I Nurnberger9, Tatiana M Foroud10, Jessica E Salvatore11,12, Kathleen K Bucholz2, Bernice Porjesz5.   

Abstract

Predictive models for recovering from alcohol use disorder (AUD) and identifying related predisposition biomarkers can have a tremendous impact on addiction treatment outcomes and cost reduction. Our sample (N = 1376) included individuals of European (EA) and African (AA) ancestry from the Collaborative Study on the Genetics of Alcoholism (COGA) who were initially assessed as having AUD (DSM-5) and reassessed years later as either having AUD or in remission. To predict this difference in AUD recovery status, we analyzed the initial data using multimodal, multi-features machine learning applications including EEG source-level functional brain connectivity, Polygenic Risk Scores (PRS), medications, and demographic information. Sex and ancestry age-matched stratified analyses were performed with supervised linear Support Vector Machine application and were calculated twice, once when the ancestry was defined by self-report and once defined by genetic data. Multifeatured prediction models achieved higher accuracy scores than models based on a single domain and higher scores in male models when the ancestry was based on genetic data. The AA male group model with PRS, EEG functional connectivity, marital and employment status features achieved the highest accuracy of 86.04%. Several discriminative features were identified, including collections of PRS related to neuroticism, depression, aggression, years of education, and alcohol consumption phenotypes. Other discriminated features included being married, employed, medication, lower default mode network and fusiform connectivity, and higher insula connectivity. Results highlight the importance of increasing genetic homogeneity of analyzed groups, identifying sex, and ancestry-specific features to increase prediction scores revealing biomarkers related to AUD remission.

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Year:  2021        PMID: 33723218      PMCID: PMC7960734          DOI: 10.1038/s41398-021-01281-2

Source DB:  PubMed          Journal:  Transl Psychiatry        ISSN: 2158-3188            Impact factor:   6.222


  63 in total

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Authors:  Roseann E Peterson; Alexis C Edwards; Silviu-Alin Bacanu; Danielle M Dick; Kenneth S Kendler; Bradley T Webb
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2.  Participation in treatment and Alcoholics Anonymous: a 16-year follow-up of initially untreated individuals.

Authors:  Rudolf H Moos; Bernice S Moos
Journal:  J Clin Psychol       Date:  2006-06

Review 3.  The role of the parahippocampal cortex in cognition.

Authors:  Elissa M Aminoff; Kestutis Kveraga; Moshe Bar
Journal:  Trends Cogn Sci       Date:  2013-07-10       Impact factor: 20.229

4.  Lesions of perirhinal and parahippocampal cortex that spare the amygdala and hippocampal formation produce severe memory impairment.

Authors:  S Zola-Morgan; L R Squire; D G Amaral; W A Suzuki
Journal:  J Neurosci       Date:  1989-12       Impact factor: 6.167

Review 5.  Developing and evaluating polygenic risk prediction models for stratified disease prevention.

Authors:  Nilanjan Chatterjee; Jianxin Shi; Montserrat García-Closas
Journal:  Nat Rev Genet       Date:  2016-05-03       Impact factor: 53.242

6.  Sequential studies of sleep disturbance and quality of life in abstaining alcoholics.

Authors:  T J Cohn; J H Foster; T J Peters
Journal:  Addict Biol       Date:  2003-12       Impact factor: 4.280

7.  How can we begin to measure recovery?

Authors:  Karen Dodge; Barbara Krantz; Paul J Kenny
Journal:  Subst Abuse Treat Prev Policy       Date:  2010-12-07

8.  Parental alcohol use and risk of behavioral and emotional problems in offspring.

Authors:  Liam Mahedy; Gemma Hammerton; Alison Teyhan; Alexis C Edwards; Kenneth S Kendler; Simon C Moore; Matthew Hickman; John Macleod; Jon Heron
Journal:  PLoS One       Date:  2017-06-06       Impact factor: 3.240

9.  Schizophrenia polygenic risk score and 20-year course of illness in psychotic disorders.

Authors:  Katherine G Jonas; Todd Lencz; Kaiqiao Li; Anil K Malhotra; Greg Perlman; Laura J Fochtmann; Evelyn J Bromet; Roman Kotov
Journal:  Transl Psychiatry       Date:  2019-11-14       Impact factor: 6.222

10.  Genome-wide polygenic scores for common diseases identify individuals with risk equivalent to monogenic mutations.

Authors:  Amit V Khera; Mark Chaffin; Krishna G Aragam; Mary E Haas; Carolina Roselli; Seung Hoan Choi; Pradeep Natarajan; Eric S Lander; Steven A Lubitz; Patrick T Ellinor; Sekar Kathiresan
Journal:  Nat Genet       Date:  2018-08-13       Impact factor: 38.330

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  5 in total

1.  Multimodal neuroimaging of metabotropic glutamate 5 receptors and functional connectivity in alcohol use disorder.

Authors:  Kelly Smart; Patrick D Worhunsky; Dustin Scheinost; Gustavo A Angarita; Irina Esterlis; Richard E Carson; John H Krystal; Stephanie S O'Malley; Kelly P Cosgrove; Ansel T Hillmer
Journal:  Alcohol Clin Exp Res       Date:  2022-04-21       Impact factor: 3.928

2.  Using machine learning to predict heavy drinking during outpatient alcohol treatment.

Authors:  Walter Roberts; Yize Zhao; Terril Verplaetse; Kelly E Moore; MacKenzie R Peltier; Catherine Burke; Yasmin Zakiniaeiz; Sherry McKee
Journal:  Alcohol Clin Exp Res       Date:  2022-04-14       Impact factor: 3.928

3.  Insights on rehabilitation programs, women, families, and COVID19.

Authors:  Sivan Kinreich
Journal:  Transl Psychiatry       Date:  2022-06-09       Impact factor: 7.989

4.  Drinking and smoking polygenic risk is associated with childhood and early-adulthood psychiatric and behavioral traits independently of substance use and psychiatric genetic risk.

Authors:  Flavio De Angelis; Frank R Wendt; Gita A Pathak; Daniel S Tylee; Aranyak Goswami; Joel Gelernter; Renato Polimanti
Journal:  Transl Psychiatry       Date:  2021-11-13       Impact factor: 6.222

5.  Occupational factors associated with long-term abstinence among persons treated for alcohol dependence: A follow-up study.

Authors:  Sinu Ezhumalai; D Muralidhar; Pratima Murthy
Journal:  Indian J Occup Environ Med       Date:  2022-07-04
  5 in total

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