Literature DB >> 33722077

Applications of Single-Cell DNA Sequencing.

Gilad D Evrony1, Anjali Gupta Hinch2, Chongyuan Luo3.   

Abstract

Over the past decade, genomic analyses of single cells-the fundamental units of life-have become possible. Single-cell DNA sequencing has shed light on biological questions that were previously inaccessible across diverse fields of research, including somatic mutagenesis, organismal development, genome function, and microbiology. Single-cell DNA sequencing also promises significant future biomedical and clinical impact, spanning oncology, fertility, and beyond. While single-cell approaches that profile RNA and protein have greatly expanded our understanding of cellular diversity, many fundamental questions in biology and important biomedical applications require analysis of the DNA of single cells. Here, we review the applications and biological questions for which single-cell DNA sequencing is uniquely suited or required. We include a discussion of the fields that will be impacted by single-cell DNA sequencing as the technology continues to advance. Expected final online publication date for the Annual Review of Genomics and Human Genetics Volume 22 is August 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.

Entities:  

Year:  2021        PMID: 33722077     DOI: 10.1146/annurev-genom-111320-090436

Source DB:  PubMed          Journal:  Annu Rev Genomics Hum Genet        ISSN: 1527-8204            Impact factor:   8.929


  6 in total

1.  Droplet microfluidics for functional temporal analysis and cell recovery on demand using microvalves: application in immunotherapies for cancer.

Authors:  Sagar N Agnihotri; Giovanni Stefano Ugolini; Matthew Ryan Sullivan; Yichao Yang; Agustin De Ganzó; Ji Won Lim; Tania Konry
Journal:  Lab Chip       Date:  2022-08-23       Impact factor: 7.517

2.  Quantifying chromosomal instability from intratumoral karyotype diversity using agent-based modeling and Bayesian inference.

Authors:  Andrew R Lynch; Nicholas L Arp; Amber S Zhou; Beth A Weaver; Mark E Burkard
Journal:  Elife       Date:  2022-04-05       Impact factor: 8.713

3.  Whole-Genome Amplification-Surveying Yield, Reproducibility, and Heterozygous Balance, Reported by STR-Targeting MIPs.

Authors:  Ofir Raz; Liming Tao; Tamir Biezuner; Tzipy Marx; Yaara Neumeier; Narek Tumanyan; Ehud Shapiro
Journal:  Int J Mol Sci       Date:  2022-05-31       Impact factor: 6.208

4.  CellPhy: accurate and fast probabilistic inference of single-cell phylogenies from scDNA-seq data.

Authors:  Alexey Kozlov; Joao M Alves; Alexandros Stamatakis; David Posada
Journal:  Genome Biol       Date:  2022-01-26       Impact factor: 13.583

Review 5.  A Primer for Single-Cell Sequencing in Non-Model Organisms.

Authors:  James M Alfieri; Guosong Wang; Michelle M Jonika; Clare A Gill; Heath Blackmon; Giridhar N Athrey
Journal:  Genes (Basel)       Date:  2022-02-19       Impact factor: 4.096

Review 6.  Somatic variant calling from single-cell DNA sequencing data.

Authors:  Monica Valecha; David Posada
Journal:  Comput Struct Biotechnol J       Date:  2022-06-14       Impact factor: 6.155

  6 in total

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