Literature DB >> 33721368

Computational modeling of malignant ascites reveals CCL5-SDC4 interaction in the immune microenvironment of ovarian cancer.

Soochi Kim1, Youngjin Han2,3, Se Ik Kim4, Juwon Lee2,3, HyunA Jo2,3, Wenyu Wang2,5, Untack Cho2,5, Woong-Yang Park6,7, Thomas A Rando1,8,9, Danny N Dhanasekaran10,11, Yong Sang Song2,3,4,5.   

Abstract

Fluid accumulation in the abdominal cavity is commonly found in advanced-stage ovarian cancer patients, which creates a specialized tumor microenvironment for cancer progression. Using single-cell RNA sequencing (scRNA-seq) of ascites cells from five patients with ovarian cancer, we identified seven cell types, including heterogeneous macrophages and ovarian cancer cells. We resolved a distinct polarization state of macrophages by MacSpectrum analysis and observed subtype-specific enrichment of pathways associated with their functions. The communication between immune and cancer cells was predicted through a putative ligand-receptor pair analysis using NicheNet. We found that CCL5, a chemotactic ligand, is enriched in immune cells (T cells and NK cells) and mediates ovarian cancer cell survival in the ascites, possibly through SDC4. Moreover, SDC4 expression correlated with poor overall survival in ovarian cancer patients. Our study highlights the potential role of T cells and NK cells in long-term survival patients with ovarian cancer, indicating SDC4 as a potential prognostic marker in ovarian cancer patients.
© 2021 Wiley Periodicals LLC.

Entities:  

Keywords:  ascites; intercellular communication; ovarian cancer; single-cell RNA-seq; tumor microenvironment

Mesh:

Substances:

Year:  2021        PMID: 33721368      PMCID: PMC8080545          DOI: 10.1002/mc.23289

Source DB:  PubMed          Journal:  Mol Carcinog        ISSN: 0899-1987            Impact factor:   4.784


  51 in total

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2.  Heparan sulphate proteoglycan expression in human primary liver tumours.

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3.  Distribution and clinical significance of heparan sulfate proteoglycans in ovarian cancer.

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4.  Mitochondrial fission causes cisplatin resistance under hypoxic conditions via ROS in ovarian cancer cells.

Authors:  Youngjin Han; Boyun Kim; Untack Cho; In Sil Park; Se Ik Kim; Danny N Dhanasekaran; Benjamin K Tsang; Yong Sang Song
Journal:  Oncogene       Date:  2019-08-13       Impact factor: 9.867

5.  NicheNet: modeling intercellular communication by linking ligands to target genes.

Authors:  Robin Browaeys; Wouter Saelens; Yvan Saeys
Journal:  Nat Methods       Date:  2019-12-09       Impact factor: 28.547

6.  Online survival analysis software to assess the prognostic value of biomarkers using transcriptomic data in non-small-cell lung cancer.

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7.  UALCAN: A Portal for Facilitating Tumor Subgroup Gene Expression and Survival Analyses.

Authors:  Darshan S Chandrashekar; Bhuwan Bashel; Sai Akshaya Hodigere Balasubramanya; Chad J Creighton; Israel Ponce-Rodriguez; Balabhadrapatruni V S K Chakravarthi; Sooryanarayana Varambally
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Review 8.  Tumor evolution and chemoresistance in ovarian cancer.

Authors:  Soochi Kim; Youngjin Han; Se Ik Kim; Hee-Seung Kim; Seong Jin Kim; Yong Sang Song
Journal:  NPJ Precis Oncol       Date:  2018-09-17

9.  Crosstalk between hepatic tumor cells and macrophages via Wnt/β-catenin signaling promotes M2-like macrophage polarization and reinforces tumor malignant behaviors.

Authors:  Yang Yang; Yu-Chen Ye; Yan Chen; Jun-Long Zhao; Chun-Chen Gao; Hua Han; Wen-Chao Liu; Hong-Yan Qin
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10.  Ovarian cancer stem cells and macrophages reciprocally interact through the WNT pathway to promote pro-tumoral and malignant phenotypes in 3D engineered microenvironments.

Authors:  Shreya Raghavan; Pooja Mehta; Yuying Xie; Yu L Lei; Geeta Mehta
Journal:  J Immunother Cancer       Date:  2019-07-19       Impact factor: 13.751

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  4 in total

Review 1.  Friend and foe: the regulation network of ascites components in ovarian cancer progression.

Authors:  Zhe Geng; Xinxing Pan; Juan Xu; Xuemei Jia
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Review 2.  The Dual Role of Innate Lymphoid and Natural Killer Cells in Cancer. from Phenotype to Single-Cell Transcriptomics, Functions and Clinical Uses.

Authors:  Stefania Roma; Laura Carpen; Alessandro Raveane; Francesco Bertolini
Journal:  Cancers (Basel)       Date:  2021-10-09       Impact factor: 6.639

3.  Single-Cell RNA-Seq Reveals the Promoting Role of Ferroptosis Tendency During Lung Adenocarcinoma EMT Progression.

Authors:  Jiaxi Yao; Yuchong Zhang; Mengling Li; Zuyu Sun; Tao Liu; Mingfang Zhao; Zhi Li
Journal:  Front Cell Dev Biol       Date:  2022-01-20

4.  Single-cell sequencing reveals effects of chemotherapy on the immune landscape and TCR/BCR clonal expansion in a relapsed ovarian cancer patient.

Authors:  Yanyu Ren; Runrong Li; Hanxiao Feng; Jieying Xie; Lin Gao; Shuai Chu; Yan Li; Fanliang Meng; Yunshan Ning
Journal:  Front Immunol       Date:  2022-09-28       Impact factor: 8.786

  4 in total

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