| Literature DB >> 33718071 |
Guangrui Fan1, Kun Li1, Yangyang Pang1, Youli Zhao1, Yan Tao1, Huimin Gui1, Hanzhang Wang2, Robert Svatek2, Ronald Rodriguez2, Zhiping Wang1.
Abstract
BACKGROUND: To investigate the association between single nucleotide polymorphisms (rs10078761, rs12696304, rs2853669, rs16847897, rs2736100, rs10069690) of telomerase gene (TERT) and the risk clinical benign prostatic hyperplasia (BPH) in a Chinese Han population of the Northwest region.Entities:
Keywords: Telomerase (TERT); benign prostatic hyperplasia (BPH); single nucleotide polymorphisms; telomerase
Year: 2021 PMID: 33718071 PMCID: PMC7947465 DOI: 10.21037/tau-20-1032
Source DB: PubMed Journal: Transl Androl Urol ISSN: 2223-4683
Basic characters of all subjects
| Characteristics | Cases | Controls |
|---|---|---|
| No. of subjects | 150 | 150 |
| Age (years) | 68.25±8.00 | 54.15±3.67 |
| BMI | 23.64±2.84 | N/A |
| MAP | 97.98±12.11 | N/A |
| IPSS, n (%) | 16.91±7.75 | N/A |
| 0–19 | 94 (62.7%) | |
| ≥20 | 56 (37.3%) | |
| PSA (ng/mL), n (%) | 5.49±5.66 | N/A |
| <4 | 81 (54.0%) | |
| ≥4 | 69 (46.0%) | |
| PV (mL), n (%) | 54.78±39.12 | N/A |
| <30 | 37 (24.7%) | |
| ≥30 | 113 (75.3%) | |
| Qmax (mL/sec), n (%) | 10.36±3.20 | N/A |
| <10 | 55 (36.7%) | |
| ≥10 | 95 (63.3%) | |
| PVR (mL), n (%) | 56.87±170.65 | N/A |
| <50 | 113(75.3%) | |
| ≥50 | 37 (24.7%) | |
| QoL | 4.53±0.85 | N/A |
| OABSS | 4.96±3.10 | N/A |
| VV (mL) | 224.83±103.30 | N/A |
| Cases with pathological diagnosis (n) | 70 | N/A |
| Prostatic biopsy, n (%) | 7 (10%) | N/A |
| Transurethral resection, n (%) | 61 (90%) | N/A |
| Repeated hematuria (n) | 55 | N/A |
| Recurrent urinary tract infections (n) | 43 | N/A |
| Acute urinary retention (n) | 52 | N/A |
| Bladder calculus (n) | 17 | N/A |
| Upper urinary tract hydrops (n) | 10 | N/A |
| Renal function abnormal (n) | 5 | N/A |
BMI, body mass index; MAP, mean arterial pressure; IPSS, International Prostate Symptom Score; QOL, quality of life score; OABSS, Overactive Bladder Symptom Score; Qmax, peak urinary flowrate; PV, prostate volume; PVR, post-void residual volume; PSA, prostate-specific antigen; VV, voided volume; N/A, not applicable.
Figure 1SNPs genotyping and LD analysis. (A) Genotype heatmap of all samples; (B) heatmap of LD analysis between mutation sites. The darker the red block, the higher the Linkage disequilibrium level.
The results of HWE test and correlation analysis of BPH risk
| SNP | Genotype or allele | Controls | Cases | Total | P value of BPH risk |
|---|---|---|---|---|---|
| rs10078761 | TT | 132 | 131 | 263 | 0.853 |
| AT | 16 | 17 | 33 | ||
| AA | 0 | 0 | 0 | ||
| T | 280 | 279 | 559 | ||
| A | 16 | 17 | 33 | ||
| P value of HWE | 0.487 | 0.459 | 0.310 | ||
| rs12696304 | CC | 21 | 12 | 33 | 0.214 |
| CG | 60 | 69 | 129 | ||
| GG | 67 | 67 | 134 | ||
| C | 102 | 93 | 195 | ||
| G | 194 | 203 | 397 | ||
| P value of HWE | 0.212 | 0.319 | 0.816 | ||
| rs2853669 | CC | 15 | 21 | 36 | 0.299 |
| TC | 79 | 67 | 146 | ||
| TT | 53 | 60 | 113 | ||
| C | 109 | 109 | 218 | ||
| T | 185 | 187 | 372 | ||
| P value of HWE | 0.066 | 0.742 | 0.285 | ||
| rs16847897 | CC | 58 | 58 | 116 | 0.945 |
| CG | 65 | 67 | 132 | ||
| GG | 25 | 23 | 48 | ||
| C | 181 | 183 | 364 | ||
| G | 115 | 113 | 228 | ||
| P value of HWE | 0.357 | 0.618 | 0.315 | ||
| rs2736100 | GG | 25 | 29 | 54 | 0.699 |
| GT | 81 | 74 | 155 | ||
| TT | 42 | 45 | 87 | ||
| G | 131 | 132 | 263 | ||
| T | 165 | 164 | 329 | ||
| P value of HWE | 0.184 | 0.886 | 0.298 | ||
| rs10069690 | CC | 95 | 97 | 192 | 0.191 |
| CT | 51 | 44 | 95 | ||
| TT | 2 | 7 | 9 | ||
| C | 241 | 238 | 479 | ||
| T | 55 | 58 | 113 | ||
| P value of HWE | 0.091 | 0.492 | 0.502 |
SNP, single nucleotide polymorphism; HWE, Hardy-Weinberg equilibrium.
The results of haplotype analysis
| Haplotype | Case (freq) | Control (freq) | Chi2 | Monte Carlo P | Fisher’s P | Pearson’s P | Odds ratio (95% CI) |
|---|---|---|---|---|---|---|---|
| TCCGGC | 10.21 (0.035) | 19.39 (0.066) | 2.909 | 1 | 0.0881 | 0.0881 | 0.513 (0.235–1.118) |
| TCTCTC | 16.89 (0.057) | 12.12 (0.041) | 0.897 | 1 | 0.3437 | 0.3436 | 1.441 (0.674–3.082) |
| TCTGGT* | 11.38 (0.038) | 3.55 (0.012) | 4.335 | 0.8333 | 0.0374 | 0.0373 | 3.354 (1.006–11.190) |
| TCTGTC* | 25.48 (0.086) | 46.89 (0.159) | 7.119 | 0.8333 | 0.0077 | 0.0076 | 0.498 (0.296–0.836) |
| TGCCGC | 34.89 (0.118) | 26.60 (0.090) | 1.400 | 1 | 0.2368 | 0.2367 | 1.383 (0.807–2.371) |
| TGCCGT | 5.87 (0.020) | 13.99 (0.048) | 3.350 | 1 | 0.0673 | 0.0672 | 0.411 (0.154–1.096) |
| TGCCTC* | 21.88 (0.074) | 11.10 (0.038) | 3.923 | 0.8333 | 0.0477 | 0.0476 | 2.094 (0.994–4.412) |
| TGCGGC | 9.12 (0.031) | 13.58 (0.046) | 0.863 | 1 | 0.3529 | 0.3528 | 0.667 (0.283–1.574) |
| TGTCGT | 14.36 (0.049) | 18.11 (0.062) | 0.415 | 1 | 0.5197 | 0.5197 | 0.791 (0.386–1.618) |
| TGTCTC | 57.89 (0.196) | 71.72 (0.244) | 1.778 | 1 | 0.1824 | 0.1823 | 0.760 (0.508–1.138) |
| TGTGTC* | 35.58 (0.120) | 9.56 (0.033) | 16.876 | 0.1667 | 4.05E-05 | 4.03E-05 | 4.241 (2.028–8.869) |
| Global result | 294.00 | 296.00 | 39.787 | N/A | 1.94E-05 | 1.85E-05 | N/A |
*, a statistically significant result. SNP, single nucleotide polymorphism; N/A, not applicable.
Pathological type association with rs2853669
| SNP | Allele or genotype | Smooth muscle hyperplasia | Three types hyperplasia | Genetic models | OR (95% CI) | P value |
|---|---|---|---|---|---|---|
| rs2853669 | C | 9 (0.750) | 41(0.3306) | N/A | 6.07 (1.56–23.64) | 0.0040* |
| T | 3 (0.250) | 83 (0.6694) | ||||
| – | – | – | Additive model | N/A | 0.0155* | |
| C/C | 3 (0.500) | 7 (0.1129) | Dominant model | 7.86 (2.23–27.72) | 0.0382* | |
| C/T | 3 (0.500) | 27 (0.4355) | Superdominance model | 1.19 (0.30–4.73) | 0.9549 | |
| T/T | 0 (0.000) | 28 (0.4516) | Implicit model | N/A | 0.1000 | |
| HWE test | N/A | 0.6292 | ||||
Three types hyperplasia, glandular hyperplasia, fibroplasia, and smooth muscle hyperplasia concurrence. *, a statistically significant result. SNP, single nucleotide polymorphism. HWE, Hardy-Weinberg equilibrium; N/A, not applicable.
The relevance between progressive cases and SNPs
| SNP | Allele or genotype | Progressive BPH | Non-progressive BPH | Genetic models | OR (95% CI) | P value |
|---|---|---|---|---|---|---|
| rs10078761 | A | 14 (0.121) | 3 (0.017) | N/A | 8.10 (2.27–28.85) | 0.0002* |
| T | 102 (0.879) | 177 (0.983) | ||||
| A/T | 14 (0.241) | 3 (0.033) | Codominant model | 9.23 (2.52–33.81) | 0.0001* | |
| T/T | 44 (0.759) | 87 (0.967) | ||||
| rs2736100 | G | 60 (0.517) | 72 (0.400) | N/A | 1.61 (1.01–2.57) | 0.0476* |
| T | 56 (0.483) | 108 (0.600) | ||||
| N/A | N/A | N/A | Additive model | N/A | 0.0180* | |
| T/T | 16 (0.276) | 29 (0.322) | Dominant model | 1.25 (0.60–2.58) | 0.5495 | |
| G/T | 24 (0.414) | 50 (0.556) | Superdominance model | 0.68 (0.39–1.18) | 0.1692 | |
| G/G | 18 (0.310) | 11 (0.122) | Implicit model | 3.23 (1.78–5.85) | 0.0001* | |
| rs10069690 | C | 83 (0.716) | 155 (0.861) | N/A | 0.41 (0.23–0.73) | 0.0021* |
| T | 33 (0.284) | 25 (0.139) | ||||
| N/A | N/A | N/A | Additive model | N/A | 0.0074* | |
| C/C | 31 (0.534) | 66 (0.733) | Dominant model | 0.42 (0.26–0.68) | 0.0004* | |
| C/T | 21 (0.362) | 23 (0.256) | Superdominance model | 1.58 (0.79–2.87) | 0.3838 | |
| T/T | 6 (0.103) | 1 (0.011) | Implicit model | 0.10 (0.02–0.44) | 0.0356* |
Three types hyperplasia, glandular hyperplasia, fibroplasia, and smooth muscle hyperplasia concurrence. *, a statistically significant result. SNP, single nucleotide polymorphism. HWE, Hardy-Weinberg equilibrium; N/A, not applicable.